K24548

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24548

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24548

Determination of introduced cDNA(s)

  • J013130C21 - Rice Full-length cDNAs - Original: J013130C21

    full reading [+] show sequence

    Nucleotide sequence: J013130C21 - full reading
    GAGATTAGAG GCAAGGCAGG CAGGCAGGCA GGGCTCGAGC TCCCCCTTCC 
    CACACCCATG TCCTCCTCCG CCTCCTGCCT CGCCCCTCCC CCTCTTCGTC
    TCCCGTGCTC CTCCTCCTCC TCCCCCTCTC CCGCCGCCGC CGCGAGGTTC
    GGTTCTCGGA GGAGGGCGGT AGCCGCGGCT GCTCCGGCCA AGGGATGGAG
    GCTGGTGCGC GTCTCCTGCT TCAGGCAGGA GGATGTCCCG ACGACGTCTG
    ACGACGGGCC CGGCTTCGAG CACATCTCGC GGCCGGAGAG CTCGCGGGGC
    GCGGAGGCGA GTGGGGAGGA GGGGGAAGGG GAAGGGGAAG GCTCGAGCGG
    GCAGCGTGAG CGCGGTTCCG GGGAAAGGGA TGATTGGTTC CTCAGAGCGC
    AAGAGATAAA GAGAAATTTA CGAGAAAGAA TATTCAGATT TCAGACTCAA
    CGATGGACTG TACCTTGGAC CGGAAAAACC ATTGCTCAGG TCATGATTTT
    ATGGATTGCC ACATTTTGGT TTGTGGGTTC CTGGATAGTG CCATTTTTGG
    CTCATGCTGC TGGCTTTAGC AAGGAATCAT TGACACATAG GGGCCAAGCA
    CTCTATAGCC TCTTGACGGA CATAACTGGA GGCCTTGCTG GAATTGCTAT
    TCTTCACCAT TGTCTTGGTA GATTTCGTCC CCTTCCTCCA GGCTGGTTTG
    AGTTCAATTT GAAGGGCAGA TGGTATTTGG ATGTAGCGTT GGGGTGCCTG
    TTATTCCCGC TGGTCAATTT TCTCTCTCAC ATCAACATCA ACCTAATACC
    AATGTCATCA GGGCCAGTCC CTGGGGTTTC CAGTGTAGAA CAGTCCATTG
    TGGCCCGTGA TCCAGTGGCG ATGGTTTTGT ATGCTGTGGT GGTCACTGTA
    TGTGCACCTA TATGGGAAGA GATTGTGTTC CGAGGTTTCC TCCTTCCATC
    TCTAACGCGT TACATGCCAC TTCCATGGTC AATCCTGGTA AGCGCTGCAG
    CTTTTGCACT GGCACACTTC AATGCACAGA GGGTTATGCC TTTGGTTTTT
    CTTGGTGTTG TGATGGGAGG GGTCTTTGCA AGATCACGCA ACTTGTTGGC
    GTCAATGGTG TTGCACAGCC TATGGAACGG TTTTGTGTTC TTGGATTTGA
    TGAAGTGAGC TATTCTGGTG GGACTGCAAC TTCGGGCACC TGAGACAAGT
    TCTACTAAGA CTATGTTTTG CGTCTTTCGT GGAGATGATG AAGACCAGTC
    TATTCAGGAC ACAGGGGACA CAAGGTGGTA GTCAGATTTT TGTGGAGAAA
    TTGTGTAGAG TAAAGAGAAA AGAGCAGTTT GTTGGCGCGC TAGTGCAGGA
    GGAATAGTCT TTAGGGTGTT ATTCCTTGGC CTGAGGCCCA GAAGCGTCTT
    TGTTGCTTTC GTGTAAATTA CATACGCATG AGAATAATTG TCTCATCGTG
    TATAGATTTC CCATTTCGTA TTAAATTGTG TATTCGTTTC CCCTAGTGTG
    GGCTCTGGAA AATAAATTCA TTTAGCAAGA CGGCCACTAT GCATTCGACC
    GATTCTTTTG CCCATTAGAT TAATAAGCTG TAGTGATTCT AAATTCAGAG
    AAAACTATCA GTATTATGTG TTGAGATGCT TTGAGCGATG TTATGTATCT
    AAACGTGAAT GAGCATTGGT GGTGTTCTGC ATATCTCGTG TGAGTTGTAA
    AAATCCAGGA GAATGCCTCG ATCGATGGAA TATTATTTTC ATGGCTCTCT
    T

    Gene models with high sequence identity

    1. AT5G60750.1 [+] show detail - CAAX amino terminal protease family protein
      E-value: 6e-73; Score: 272.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G60750.1

    Model type
    Protein coding
    Short Description
    CAAX amino terminal protease family protein
    Computational Description
    CAAX amino terminal protease family protein; FUNCTIONS IN: endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Abortive infection protein (InterPro:IPR003675); BEST Arabidopsis thaliana protein match is: CAAX amino terminal protease family protein (TAIR:AT1G14270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR