K24548

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24548

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24548

Determination of introduced cDNA(s)

  • J013130C21 - Rice Full-length cDNAs - Original: J013130C21

    full reading [+] show sequence

    Nucleotide sequence: J013130C21 - full reading 
    GAGATTAGAG GCAAGGCAGG CAGGCAGGCA GGGCTCGAGC TCCCCCTTCC 
    CACACCCATG TCCTCCTCCG CCTCCTGCCT CGCCCCTCCC CCTCTTCGTC 
    TCCCGTGCTC CTCCTCCTCC TCCCCCTCTC CCGCCGCCGC CGCGAGGTTC 
    GGTTCTCGGA GGAGGGCGGT AGCCGCGGCT GCTCCGGCCA AGGGATGGAG 
    GCTGGTGCGC GTCTCCTGCT TCAGGCAGGA GGATGTCCCG ACGACGTCTG 
    ACGACGGGCC CGGCTTCGAG CACATCTCGC GGCCGGAGAG CTCGCGGGGC 
    GCGGAGGCGA GTGGGGAGGA GGGGGAAGGG GAAGGGGAAG GCTCGAGCGG 
    GCAGCGTGAG CGCGGTTCCG GGGAAAGGGA TGATTGGTTC CTCAGAGCGC 
    AAGAGATAAA GAGAAATTTA CGAGAAAGAA TATTCAGATT TCAGACTCAA 
    CGATGGACTG TACCTTGGAC CGGAAAAACC ATTGCTCAGG TCATGATTTT 
    ATGGATTGCC ACATTTTGGT TTGTGGGTTC CTGGATAGTG CCATTTTTGG 
    CTCATGCTGC TGGCTTTAGC AAGGAATCAT TGACACATAG GGGCCAAGCA 
    CTCTATAGCC TCTTGACGGA CATAACTGGA GGCCTTGCTG GAATTGCTAT 
    TCTTCACCAT TGTCTTGGTA GATTTCGTCC CCTTCCTCCA GGCTGGTTTG 
    AGTTCAATTT GAAGGGCAGA TGGTATTTGG ATGTAGCGTT GGGGTGCCTG 
    TTATTCCCGC TGGTCAATTT TCTCTCTCAC ATCAACATCA ACCTAATACC 
    AATGTCATCA GGGCCAGTCC CTGGGGTTTC CAGTGTAGAA CAGTCCATTG 
    TGGCCCGTGA TCCAGTGGCG ATGGTTTTGT ATGCTGTGGT GGTCACTGTA 
    TGTGCACCTA TATGGGAAGA GATTGTGTTC CGAGGTTTCC TCCTTCCATC 
    TCTAACGCGT TACATGCCAC TTCCATGGTC AATCCTGGTA AGCGCTGCAG 
    CTTTTGCACT GGCACACTTC AATGCACAGA GGGTTATGCC TTTGGTTTTT 
    CTTGGTGTTG TGATGGGAGG GGTCTTTGCA AGATCACGCA ACTTGTTGGC 
    GTCAATGGTG TTGCACAGCC TATGGAACGG TTTTGTGTTC TTGGATTTGA 
    TGAAGTGAGC TATTCTGGTG GGACTGCAAC TTCGGGCACC TGAGACAAGT 
    TCTACTAAGA CTATGTTTTG CGTCTTTCGT GGAGATGATG AAGACCAGTC 
    TATTCAGGAC ACAGGGGACA CAAGGTGGTA GTCAGATTTT TGTGGAGAAA 
    TTGTGTAGAG TAAAGAGAAA AGAGCAGTTT GTTGGCGCGC TAGTGCAGGA 
    GGAATAGTCT TTAGGGTGTT ATTCCTTGGC CTGAGGCCCA GAAGCGTCTT 
    TGTTGCTTTC GTGTAAATTA CATACGCATG AGAATAATTG TCTCATCGTG 
    TATAGATTTC CCATTTCGTA TTAAATTGTG TATTCGTTTC CCCTAGTGTG 
    GGCTCTGGAA AATAAATTCA TTTAGCAAGA CGGCCACTAT GCATTCGACC 
    GATTCTTTTG CCCATTAGAT TAATAAGCTG TAGTGATTCT AAATTCAGAG 
    AAAACTATCA GTATTATGTG TTGAGATGCT TTGAGCGATG TTATGTATCT 
    AAACGTGAAT GAGCATTGGT GGTGTTCTGC ATATCTCGTG TGAGTTGTAA 
    AAATCCAGGA GAATGCCTCG ATCGATGGAA TATTATTTTC ATGGCTCTCT 
    T

    Gene models with high sequence identity

    1. AT5G60750.1 [+] show detail - CAAX amino terminal protease family protein
      E-value: 6e-73; Score: 272.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G60750.1

    Model type
    Protein coding
    Short Description
    CAAX amino terminal protease family protein
    Computational Description
    CAAX amino terminal protease family protein; FUNCTIONS IN: endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Abortive infection protein (InterPro:IPR003675); BEST Arabidopsis thaliana protein match is: CAAX amino terminal protease family protein (TAIR:AT1G14270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR