K24601

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24601

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24601

Determination of introduced cDNA(s)

  • J013011H16 - Rice Full-length cDNAs - Original: J013011H16

    full reading [+] show sequence

    Nucleotide sequence: J013011H16 - full reading
    GAGACATCCT CCTCGTCGTC GGCCGTGTCA TTGGCGGCGC CGGCGCCGGC 
    GCCCCAGGAG TTCTCGACGC CGCCGGGGAG GCGGGGAGCT CGTCGTCTTC
    TCTCCTCCTC CTTTCTCCGT CCCCCCCCTT CGGCATCCGC TGCCGACCCC
    GCGACCCGAG CACATCCGCC GGCGGCGCCT CTCCGCCACC TATCTCCGAC
    TACTCAGTTC ACGCTGGTTG CGCTTGCGCA CATCCTGACT AAGGGCACCT
    GATAGGGCAA CAGTGATTAG TTCCGTGGAA AAGGACTTTT GGATACGGTT
    TAGCTAAAAT GGCAAACATG AACATAACCA CCATCTTGGA GAAGATGACA
    GGGAAAGATA AGGACTACAG ATATATGGCA ACTTCAAATT TGCTTAGCGA
    TTGAACAAAG AGGGCTTCAA AGCTGACCAA GACATTGAGC CAAAGTTGAC
    TACTACCGTT CTTCAACAAC TGGAAGATAC TTCAGGAGAA GTCTCTGGTT
    TAGCTGTTAA ATGCTTGGCT CCACTTGTCA AGAAGGTTGG TGAGGATAGT
    GTGGTGGAGA TGACCAACAT TCTTTGTGAT AAGTTACTCA ATGGAAAGGA
    CCAACATCGA GACACTGCTA GTATTGCTCT GAAGACAATC ATTGCGGAAG
    TTACGACAAC AACACTTGCT GAAAAGATTT TGGTGTCTCT TGCCCCACAG
    CTAATCAAGG GCGCCACTGC TGGAAAAAGT GCGGAAGTGA AATGCGAGTG
    CCTTGATATA TTGGGGGATG TACTTCATAG ATTTGGCAAC TTGATCACAA
    AAGATCATGA TTGCATGCTG ACTGCCTTGT TATCCCAGTT GAGCTCTAAC
    CAAGCAAGTG TTAGGAAAAA GTCTATTTCT TGCATTGCAT CACTTGCTGC
    ATGTCTGTCT GATGATTTAT TAGCCAAGGC AACTTTTGAG GTTGTCCAGT
    TGCTTAAAAA TAGAAGTGCA AAATCTGAAA TTGCCTGAAC AAATATCCAG
    ATGATTGGTG CTCTAAGTCG CTCGGTTGGA TACCGTTTTG GGCCACACCT
    TGCTGAAGTT GTTCCTTTGC TCATAAACTA TTGTACAAGT GCATCAGAAA
    ATGATGAAGA GCTCTGTGAA TACAGCTTGC AGGCCCTCGA GAGTTTTATG
    CTGAGGTGTC CAAGAGATAT ATCTCCATAT TGTGAGAGTA TTTTAAATCT
    TGCATTGGAA TATATAAGCT ATGATCCTAA TTTCACCGAT AGTATGGAGG
    AGGACACTGA TGATGAGGCT CAGGATGAGG AAGATGATGA GTACTTAATT
    GATGCTCTTA CAGTAATAGA TAAATGTTAT CTGTTTACTT GATCAAAATA
    TGTTTTCGAT ATTTTCTCCA GTGAGAGCGC AAATGAATAC ACAGATGATG
    AGGATGCAAG CTGGAAAGTC CGGAGGGCTT CAGCAAAGTG CTTATATGCA
    ATTATAGTAT CTCGTCCTGA AATGTTGTCT AAGATGTATC TGGAGGCTTG
    TCCAAAGTTA ATTGAATGGT TTAGGGAAAG AGAGGAAAAT GTAAAGATCG
    ACATCTTTAA CACATTTATT GAGTTGTTAC GCCAAACTGG TAACATGACA
    AAAGGATAAG GTGACATTGA TGAGTCTAGC CCTAGATGGT TGCTGAAACA
    AGAAGTACCT AAGGTTGTCA AATCCATCAA TAGGCAGTTG CGTGAAAAAT
    CAATCAAGAC AAAGGTTGGA GCATTCTCTG TATTGAAGGA GCTTGTTGTT
    GTACTGCCAG ACTGTCTTGC TGATCATATT GGGTCACTTG TTCCTGGGAT
    TGAGAACGCT TTGAATGATA AGTCATCTAC CTCCAACCTG AAGATTGAAG
    CCCTTGTATT TACAAGACTT GTTATGGCTT CACATTCCCC AGCTGTGTTT
    CATCCATACA TACAGGCTCT TTCTGGCCCA ATATTGTCTG CTATTGGAGA
    CAGATATGAC AAGGTCACCG CTGAGGCTTT AAGAGTCTGC GAAGAGCTAG
    TTCGTGTACT TCGTCCAAAT TCTGAGCCAC ACTCTCCAGA TTACAGGCCA
    TATATTGGTC CAATCTATAA GGCTATCTTG GCCCGCTTGG CAAATCAGGA
    TCAGGATCAG GATCAGGAAG TTAAAGAGTG TGCCATATCT TGCATGAGCC
    TTGCGCTATC CACGTTTGGT GATGGTCTCC AAAGGGAACT GCCGGCATGC
    CTTCCCGTTC TTGTTGATAG AATGGGTAAT GAAATAACTA GACTTACAGC
    AGTTAAGGAG ATAGAACACA ATGGACAACC TTTAGGATTA GTGAAATCGC
    CATCATCAGT AGTAGAATAG AATGAGCAGA TACACATAGT TGGTCTTCTC
    AAGGCATGAA GATGAAATTC TTTATCATGG ATGAAAAGTA TAATATGGAA
    GCCAAAGGGA TTTATAAGAA GATTGATGAG TTGGTCAGCC TGGCTAATCA
    TTCAATGTTT CTGGCTCCAG TGTTTGCTTT GCATGATAAG AAGATCGGTC
    GTATTATTCT GTGTTATCCA AAATTTGATC AACTGCTTAA AGATTGGCTG
    CCTGCTCAAG CCTTTTAAAG GCCGGTTTAT ACCACCCATA TGGATGCATC
    TTATAAAAGA TGTCATATCT TACATGAGCA ACATTGATAA CTTGGCTGCA
    AGCTTAGGAA GTATTGACTC ATATGTGTTG GAGACAAAGC CCGAGAAAAT
    AAAGGTCATC CTTTTTCCTT TTGAGTCAAG AGAAGTAAAT TGGCGAAAAG
    ATTTTGCTAC ATTTCTGATA GAACATCTTC GGAACAAATG GAAATCCACC
    ATGTTGGATC ACTTCATCAA CATCTTACAA AAAGATTTCA AAATTGGGTA
    CATTCAACAT CATCCGTTGT TGCAAGATTT CAATCAGCTT TCTAACATGA
    TAAGGATGAC ATGGAAAGAA TCTAAGTATT TAACTGTTGA GAGGAGAGTA
    TTGCTATCTT CAACATTAAA TGCTATTAGG AACAACATTC CATGGACATC
    AGTGACAACT ATGGATGCTG TTGTGAATGA ATACATTTCT AAAGCAACAA
    ATGACTCCTT GGGCCTCTTT ATGGAAATTA AGAAGATAGC AGCACATTAC
    ATTGAAAACC GCCGAAAACT GAACAAAGAA AAAGGGATAT GCAATAGGAA
    ACAGGTACAT CCAATTGAGA TAATCGAAGA AATCTGGCCA GGTGCTATTG
    AAGAAATTTA TGAGCTTAGT TTAAAATCTG AGTGGCTCAT GACTTGACTT
    GTGAATGGTG AGAGTGAAAA TATCAGTGCT GAAGGATCTG GAGTACTCTG
    AAAATCATGA ATGGGTTAGT GTTGAAGGCG ATTATGCAAC AATTGGGATT
    TCAGATCATG CCCAGATGCA AACACGTTCG GCAAGCTAGC GAGTTAAATG
    GTGGGTTGGA AGAGCTCTAC AGGAAAGATG AGGCAGAACT AGCTCTACAG
    CAAAAGATGA GGCATAACTT GGTTGAACGT TTTTTTGTTT CTCTTTTTTT
    TGGGTGAGGG GATCGCCTTT TGTTTCTATT GCATGCTATG TAACGGTGGA
    GAGAATCATT ATCTTCACTA TTTGAAAAAT GATTCTACAG AAGATGATTG
    TTTTTTATGG CAGTGCTTGA AGGGCTCTGC TTCGTGGTAA AAAAGAACAC
    TTGCG

    Gene models with high sequence identity

    1. AT2G02560.2 [+] show detail - cullin-associated and neddylation dissociated
      E-value: 0; Score: 52.80

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Armadillo-like helical 6.1e-38
    Gene3D Armadillo-like helical 2.4e-15
    Gene3D Armadillo-like helical 3.6e-13
    Gene3D Armadillo-like helical 1.3e-53
    HMMPanther TIP120 2.3e-90
    HMMPanther TIP120 1.1e-13
    HMMPanther TIP120 4.9e-35
    HMMPanther TIP120 1.1e-32
    superfamily Armadillo-type fold 8.6e-14
    superfamily Armadillo-type fold 1.5e-10
    superfamily Armadillo-type fold 1.7e-15

    See the detailed result >

    AT2G02560.2

    Model type
    Protein coding
    Short Description
    cullin-associated and neddylation dissociated
    Curator Summary
    Arabidopsis thaliana homolog of human CAND1 (cullin-associated and neddylation-dissociated). Putative similarity to TBP-interacting protein TIP120. Ubiquitously expressed in plant tissues throughout development. T-DNA insertion mutant plants were completely sterile and resistant to sirtinol and auxin, but not to gibberellins or brassinolide. Displayed developmental phenotypes similar to those of axr1, namely, short petioles, downwardly curling leaves, shorter inflorescence. Required for SCF function and appears to modulate SCF complex cycling. Physically interacts with CUL1.
    Computational Description
    cullin-associated and neddylation dissociated (CAND1); FUNCTIONS IN: binding; INVOLVED IN: xylem and phloem pattern formation, response to auxin stimulus, vegetative to reproductive phase transition of meristem; LOCATED IN: cell wall, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), TATA-binding protein interacting (TIP20) (InterPro:IPR013932); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR