K24605

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24605

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24605

Determination of introduced cDNA(s)

  • J023128L13 - Rice Full-length cDNAs - Original: J023128L13

    full reading [+] show sequence

    Nucleotide sequence: J023128L13 - full reading 
    GACGGCCAAT CTCTGCCCCT TGCTACCTCC CGCGGCGCCG CCGCCGCCGA 
    TCAGCACCAG CCGAAGTCCA GGCAGGCGGC TCGCAGGAGC AGCTCAGCAG 
    CGGCGAGGAC CAAGTCGTCA AGTCGACGCG GAGGCAATGC ACTAATGCAG 
    AGGCCAAATC GAAGGAGGCG GCGGGGTAGG TCCTGCCGTG GAGGTCGAAT 
    CCCCGGAGGG GAACGAGCCG GCGAGGTGGG ATTCGGCCGG CCGCATACAC 
    GCGCCTCCAA GTCCACTTTA CAGGAAAAAG ACTTGATGGC ACTTGGTTTG 
    CATCCACCAG AGAAGATGGT GTGCCTCTGA CTTTTATATT AGGACAAGAG 
    AATGTGATGC GAGGCTTCAG TATGGCTGTT AGCTCAATGC AAGCAGGGGA 
    GAAAGCTGTG TTCACCATCC CTCCAGAATT AGCAGGCACC AAGTCTCGGT 
    GTCCAGTTGA TATCCCAGGG AATATTGCCC CCAATGAAGC ACTGCGGTTT 
    GATATTGAGC TCATCTCTCT TGTCACCATA ACTGACATCC TCGATGATGA 
    AGGCATACTG AAAAAGATCA TCAAGCGTGG ACTGGGGAGC GATAAGCCTT 
    GTGATTTGGA TGAAGCACTT GTGAACTACA ATGCTTGCCT GGAGGATGGG 
    ATGTCAGTGT CCATGTCTGA AGGTATTGAG TTCAACCTTG CGGAAGGCTT 
    CTTTTGTCCT GCATTTGCAC GTGCTGTGGA GACTATGACA GAAGGAGAGG 
    AAGCTGTTCT CATTGTTAAA CCTGAATATG GTTTTGGTGA ACGGGGTAGA 
    CCATCCATAG GGGATGAAGC CGGTGTGCCA CCTGATGCAA CTCTCTATGT 
    GTACCTTCAA TTGATGTCAT GGAAAACAGT GAGGCACATT GGAGAGAATG 
    GGACAATCCT CAAGAAAACC CTTTGTAGAG GAAATTTGGA AGGACAGCAG 
    ACAGAGAATG AAGCAGTGGT CGGAGTTCGA CTGATTGGTA AACTGCAAGA 
    TGGGGCTGTA TTTGATCAGA GGGGCCACGA AGGAGATGAG CCGTTCAAGT 
    TCATGGTTGA CGAAGAGCAG GTTAGCGAAG GCCTAGAGGA AGCTGTTCTT 
    ACAATGCGGG AGGGAGAGGT CTCCTTGTTC ACCATTCCCC CCCATCGTGT 
    GCAGGATCAA CTTTTGGTTG TCCCTGTTGG CTCTTCCGTG ACCTACGAAA 
    TCGAGCTTGT CTCAGTTGTA AATGACAAGC CTCCCCGGCT CATGAGTCAA 
    GCAGAGACCA TCGAAGCTGC AGCTGAAAAG GAAAAGGAGG GAGACAAACT 
    GTTCAGCTCA AGCAAATTTT TGAGAGCTTA CAGGAGATAT TACAAGGCCA 
    GGCAGATCAT ACTCCTGCGC TTTGGACGAG GAGAAACAGA TGAAGAAATT 
    AAACAAATGT TGATTTCCCT TACCTTCAAA GCTGCTGAGT GCGCGAATCA 
    GCTTCAACGC TATGAACAAG CATACCACCG CTATCGTGAG ATATTGGAGT 
    ATGACCCTGG AAATGTGAAA GCACGGGAAA TGACAGGGCG GGCATTCCCT 
    GAAGCATCTC TTGGAATAGA CACTGCCGCA ATGCATAGGG GCTTGGATCA 
    GCCATTTAGG CCGAAAGAAG AGTTTCGCGT GTGCGGCGGC TACATGACCC 
    CGGAGTTCTC TGAGATGAGA CTGAAGCAAG GGCATAAATA CCATGGAAGT 
    ATAAATATTT TTGTCCCTCC TATCCCAAGA CCAGAGACCA ATGCAAATCA 
    AGCTGTTCCA GCTGCTCCTA CAGGCCACAG GCTCACACAC AGCCCTACTA 
    CACCTCCAGG TCCAAATAAT GAGAAAAGAA ACAGAAGCAG TCGTGTTCCA 
    GTCGCTGCCA GGAAGGGGCT AGCTTCTTGC TTCAGATGCA TCTCTTCAGA 
    TTGTAACTGA AGACATGTTC CCTGAAAGCA ATAAAGAAAA AAAATCTTGA 
    CCAGCAACAG GGCTGTACTA ACACTAGTTT ATTTTTTTTC GAACTAATAA 
    TTTAACTTAG GTCGAAATTA ATGACGATTC TATGG

    Gene models with high sequence identity

    1. AT5G48570.1 [+] show detail - FKBP-type peptidyl-prolyl cis-trans isomerase family protein
      E-value: 2e-91; Score: 333.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Peptidyl-prolyl cis-trans isomerase, FKBP-type 3.9e-19
    HMMPfam Peptidyl-prolyl cis-trans isomerase, FKBP-type 1e-10
    HMMPfam Peptidyl-prolyl cis-trans isomerase, FKBP-type 2.2e-12
    HMMPanther PEPTIDYLPROLYL ISOMERASE (ROF1) 8.8e-98
    HMMPanther Peptidyl-prolyl cis-trans isomerase, FKBP-type 8.8e-98
    Gene3D no description 5.1e-20
    Gene3D no description 1.3e-25
    Gene3D no description 3.7e-17
    ProfileScan Peptidyl-prolyl cis-trans isomerase, FKBP-type 19.561
    ProfileScan Peptidyl-prolyl cis-trans isomerase, FKBP-type 16.845
    ProfileScan Peptidyl-prolyl cis-trans isomerase, FKBP-type 16.066
    Coil coiled-coil 0
    superfamily FKBP-like 2.9e-23
    superfamily FKBP-like 1.2e-21
    superfamily FKBP-like 1.8e-19

    See the detailed result >

    AT5G48570.1

    Model type
    Protein coding
    Short Description
    FKBP-type peptidyl-prolyl cis-trans isomerase family protein
    Computational Description
    FKBP-type peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity, calmodulin binding; INVOLVED IN: protein folding; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: rotamase FKBP 1 (TAIR:AT3G25230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR