K24614

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24614

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24614

Determination of introduced cDNA(s)

  • J013029J19 - Rice Full-length cDNAs - Original: J013029J19

    full reading [+] show sequence

    Nucleotide sequence: J013029J19 - full reading 
    GTAGTGAAGG GGCTCATCAG CACTGGACGA TTGGAATTAA TAAACGGGGG 
    AATGTGCATG CATGATGAAG CGACCGTGCA CTACATTGAC ATGATAGACC 
    AGACTACGCT CGGGCACAGG TTCATCAAGG AGGAGTTTGG TCAGATTCCA 
    AGGATTGGTT GGCAGATTGA TCCGTTTGGG CACTCCGCAG TTCAGGCTTA 
    CCTCCTAGGC ACAGAAGTAG GATTCGATGC TTTTTATTTT TTCCGGATTG 
    ATTACCAAGA CCGTGACACA CGGAAGGGAA CAAAAGAGCT CGAGGTTGTG 
    TGGAGGGGCT CCAAGACCTT CGGCTCATCA GCTGACATCT TTGCTGGCAT 
    CTTCCCAAAA AATTATGAAC CACCTCCTGG TCAGTTTTAC TTCGAAGTTG 
    ATGATACTTC CCCAATCGTC CAGGATGATC CCCTTCTTTT TGATTATAAT 
    GTGGAGCAAC GGGTGGATGA CTTTGTTGCT GCAGCTATAG CACAGGCAAA 
    TATTACAAGG ACAAATCACG TTATGTTTAC AATGGGCACA GACTTCAAAT 
    ATCAATATGC AGAAAGTTGG TTCAGACAGA TGGACAAATT AATTCACTAC 
    GTTAATAAGG ATGGCCGTGT CAATGCTCTG TATTCCACAC CTTCGATTTA 
    TACTGATGCA AAACATGCTG AAAATGTGCC ATGGCCTCTC AAGACTAATG 
    ATTTTTTCCC GTATGCAGAC AACCCAAATG CATATTGGAC AGGTTACTTC 
    ACAAGCAGAC CTGCCTTAAA ACGATACGTT CGTGTTATGA GTGGATATTA 
    CTTGGCAGCT AGGCAGTTGG AATTCTTTAA AGGGAGAAGC AACTCTGATC 
    TCACAACAGA TAGTTTAGCT GATGCTCTAG CTCTTGCTCA GCACCATGAT 
    GCTGTTACAG GAACGGAGAA GCAACATGTC GCAAATGACT ATGCAAAGAG 
    ATTATCAATT GGCTATACAC AAGCCGAGAA GCTGGTTTCA TCCTCTCTCT 
    CTTGCTTGAG CCAGTCAGGC TCAAAATCAC ATTGTCCGTC CCAAACAACG 
    AATTTTGAAC AGTGTCCGCT CCTAAATATT ACATATTGCC CCCCTTCCGA 
    GATGGACCTT TCTCAAGGGA AAAGTTTGGT TGTGCTTGTG TACAACTCTC 
    TTGGGTGGAA ACGGGAGGAT GTCCTTCGCA TACCGGTCAT CAGTGACTCA 
    ATTGTTGTTC ATGATTCTGA GGGAAGAGAA GTTGAATCAC AACTTCTGCC 
    TATAGCTAAT GCATCTTTGT ACATGCGGGA GAAACATGTC AAGGCTTACC 
    TAGGCATGTT ACCAGCTGCA AAACCCAAGT TTTGGCTTGC TTTTCCAGTT 
    TCTGTACCAC CTCTTGGTTT CAATACGTAC TTTATATCAA GCGGGAAGAA 
    ATCAGCATCA GTCTCTTTGA TGTCCACTCT GCACTCATCT CAAGGAAGTG 
    AAAATAGTAA CATGCAAATT GGGCAAGGAC AGTTGAAACT TCAAACAATG 
    CAGCTGGAGC ATTATCTCTG TACTCCAATA GTAAGACCCA GGTTGAAGCA 
    AATTTTGAGC AGAAGTACAA GTATTACATA GGACAGGATG GAAATGGAAG 
    TGATCCTCAG GCTTCTGGAG CATACATATT TCGCCCTAAT GGCACAGTTC 
    CTATCAAGAC TGATGGACAG GTTCCTCTGA CAGTTCTCCG TGGGTCCATA 
    TTGGACGAAG TGCATCAGCA GATTAATCCA TGGATATATC AGATCAACAG 
    AGTTTACAAA GGAAAGGACT ATGTGGAGAC TGAATTTATA GTTGGACCAA 
    TACCAGTGGA TGATGGAAAT GGAAAAGAAC TATCCACTGA AGTCGTTACA 
    AACATGGCAA CAAACAAAAC ATTTTACACT GATTCCAGTG GACGTGACTT 
    CATCAAAAGG ATACGGGATT ACCGGTCAGA GTGGAAGATC GAAGTGCACC 
    AGCCTATCGC TGGAAACTAT TATCCTGTTA ATCTTGGCAT TTATGTGGAA 
    GATGGAAGCA GAGAGTTATC TATACTTGTA GACAGGTCTG TTGGAGGTGC 
    CAGCATAAAG GATGGACAGA TAGAGCTAAT GCTACACAGG AGACTACTTC 
    ATGATGATGG TCGTGGTGTT GCAGAGGCAT TAAATGAAAC AACCTGTTTT 
    GATAATCAAT GTGAAGGACT AGTTATTCAA GGAAAGTATT ATCTCAAAAT 
    TGATCCACAA GGTGAAGGAG CTAGGTGGCG GCGGACATTT GGCCAGGAAA 
    TATACTCCCC TCTTCTTATT GCTTTTGCAG AGCAGGATGG AGGTAATTGG 
    GTGAATTCAC ACGTTACAAA ATTCTCTGCA ATGGATCCGG CCTACAGCTT 
    GCCTGATAAT GTTGCATTGC TTACTCTTCA GGAACTTGAA GACGGAACTG 
    TTCTTCTTCG GTTGGCTCAC CTATACGAGG CTGGAGAGCA CAAGGATCTT 
    TCAGCTCTAG CTAGCGTCGA CCTGAAGAGA GTATTTCCAG ACAAGAAGAT 
    TGTCAAGATT GTTGAGACAA GCCTATCAGC GAACCAAGAA CGTTCAGCCA 
    TGGAGAAAAA GAGGCTGAAG TGGAAGGTGG AAGGCCCTCC TGCTGATGAA 
    AAGATCGTCC GGGGAGGCCC CGTAGATCCT TCCAAGCTCG TCGTTGATCT 
    GGGCCCCATG GAGATACGCA CATTCCTCAT CAATTTCGCC CCGCAGTCCG 
    GCAAACAGTT GATGTGAGGG GTGACATGGC CTTGGCACCA ATGTTTTATT 
    TTTAGCTTGA GTTCTTCTCA TGGTGATGAG CAATAAGAAA TAATGTGGCC 
    ATGGTGATTG GTGACCGAAT GCAGAGATGC ACTGGTAGCA TCCAACCACT 
    GAGCCCTGTT TGTAGCTTGT AAATGAATTT GGCTTCACCT TAAGTTGAGC 
    TCGGTTTCAG TGAAGATAAG TGACTG

    Gene models with high sequence identity

    1. AT5G13980.2 [+] show detail - Glycosyl hydrolase family 38 protein
      E-value: 0; Score: 522.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Glycoside hydrolase/deacetylase, beta/alpha-barrel 4.7e-76
    superfamily Families 57/38 glycoside transferase middle d 5.5e-30
    superfamily Glycoside hydrolase-type carbohydrate-binding 6.3e-28
    superfamily Glycoside hydrolase-type carbohydrate-binding 1.8e-103
    HMMPfam Glycoside hydrolase, family 38, core 4.2e-58
    HMMPfam Glycoside hydrolase, family 38, central domain 1.2e-21
    HMMPfam Glycosyl hydrolases 38, C-terminal 7.6e-16
    HMMPfam Glycosyl hydrolases 38, C-terminal 3.9e-72
    HMMSmart Glycoside hydrolase, family 38, central domain 1.9e-23
    Gene3D Glycoside hydrolase, family 38, core 2.8e-75
    Gene3D no description 2.4e-30
    Gene3D no description 9.4e-24
    Gene3D no description 1.2e-67
    HMMPanther LYSOSOMAL ALPHA-MANNOSIDASE (MANNOSIDASE ALPH 1.2e-168
    HMMPanther ALPHA-MANNOSIDASE 1.2e-168
    HMMPanther LYSOSOMAL ALPHA-MANNOSIDASE (MANNOSIDASE ALPH 2.8e-251
    HMMPanther ALPHA-MANNOSIDASE 2.8e-251

    See the detailed result >

    AT5G13980.2

    Model type
    Protein coding
    Short Description
    Glycosyl hydrolase family 38 protein
    Computational Description
    Glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: apoplast, cell wall, plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central domain (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 38 protein (TAIR:AT3G26720.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR