K24617

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24617

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24617

Determination of introduced cDNA(s)

  • J033040D12 - Rice Full-length cDNAs - Original: J033040D12

    full reading [+] show sequence

    Nucleotide sequence: J033040D12 - full reading 
    GCCCTTGAGC TAGGGTTTTA TCGCCGCCGC CGCCGCTTCT CCACTCTCCC 
    CTGCCCCCGT CGCCGTCGCC ACCGCCGCCG CCATGTCCGG GAGGAAGAAG 
    ACACGGGAGC CCAAGGAGGA GAACGTCACC CTCGGCCCGA CCGTGCGCGA 
    GGGCGAGTAC GTCTTCGGCG TCGCCCACAT CTTCGCCTCC TTCAACGACA 
    CCTTCATCCA TGTCACCGAT CTGTCCGGGA GGGAGACGCT CGTCCGCATC 
    ACTGGTGGCA TGAAGGTTAA AGCTGATCGC GACGAATCTT CCCCTTATGC 
    TGCTATGCTT GCTTCACAGG ATGTTGCTCA AAGATGCAAG GAGCTTGGAA 
    TAACTGCTTT GCATATCAAG CTCCGTGCTA CTGGTGGTAA CAAGACAAAA 
    ACCCCTGGTC CTGGTGCTCA GTCCGCACTT AGAGCACTTG CTCGATCTGG 
    CATGAAGATT GGTCGTATTG AGGATGTTAC TCCAGTGCCG ACTGATAGCA 
    CACGCAGAAA GGGTGGTAGA AGGGGTAGGA GGCTGTAATC TTCATGCGGC 
    CTCAAACCGA CAACACTCTG CTCTCCTAGA TGTTACCGTC TGCATTGGAC 
    TATTTTGTTT CTGTGCTTTT CATTCGGTGG ATTATTTAAA CCAGTTTTGA 
    ACTCTGTTTC TGCATCAATT CATGCTGTCC TCAATGTAAC CAACGTTATC 
    TGCTTCGACC GGTGAACATA CTCCTGTTGG ATTACTTGAG CATATGCCAC 
    TACAGGCCGG ACACTGCTTT CGTTGTTTAT TCGGGAGAGC ATGGCAAACT 
    TGGGAGATGA AAACCTGGAA AATGGTGCGA GGATAATGGG CATAACTGTA 
    AAATAGTGCG TTTTGTACGA AAACTTTATA TATGAAAGTT GTTTTAAAAT 
    TTCAGGTTAA TCC

    Gene models with high sequence identity

    1. AT3G52580.1 [+] show detail - Ribosomal protein S11 family protein
      E-value: 3e-59; Score: 225.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPIR Ribosomal protein S11 8.8e-50
    PatternScan Ribosomal S11, conserved site 0
    Gene3D Ribosomal protein S11 4.7e-35
    superfamily Translational machinery components 1e-38
    HMMPfam Ribosomal protein S11 1.9e-41
    HMMPanther 40S RIBOSOMAL PROTEIN S14 7.4e-98
    HMMPanther Ribosomal protein S11 7.4e-98

    See the detailed result >

    AT3G52580.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein S11 family protein
    Computational Description
    Ribosomal protein S11 family protein; CONTAINS InterPro DOMAIN/s: Ribosomal protein S11 (InterPro:IPR001971), Ribosomal S11, conserved site (InterPro:IPR018102); BEST Arabidopsis thaliana protein match is: Ribosomal protein S11 family protein (TAIR:AT3G11510.1); Has 8774 Blast hits to 8774 proteins in 2899 species: Archae - 250; Bacteria - 4863; Metazoa - 589; Fungi - 162; Plants - 729; Viruses - 0; Other Eukaryotes - 2181 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR