K24627

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24627

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24627

Determination of introduced cDNA(s)

  • J013159A12 - Rice Full-length cDNAs - Original: J013159A12

    full reading [+] show sequence

    Nucleotide sequence: J013159A12 - full reading 
    GATCCCGCTC ACGAGTTCCT CACTTCCTCC TCCGCCCGCG TCGCCCCTCC 
    TCTCCTCTCC CTCCCGGCTC CCGGCTACCG CCGCAGCCGC CCCGAGGAAA 
    TGGCTGCCCT GCAACCCTCA TTCTCTTCAG CAATGGCTAT GAAAAGTCTG 
    AAGTTACCCA AAACTGCAGT TTTACCTGGA TTTGGTGGTA TTGCACGTCC 
    TCAAGATGTG CAGGACAGGA GCGCTAACTT CACTTGTTCA AGGCCTAGAG 
    CAGCTTCAGT GACTGACCAG TCAACAGCAG AGCCAGCAAA ACCCAGGCAA 
    AACAAGCACA CTGTTGATCC TTCTGCTCCA GAATTTCTGC CACTCCCATC 
    ATTTGAAGAA TGCTTTCCAA GGAGCACAAA AGAATCAAGA GAAATTGTGC 
    ACGAGGAATC TGGCCATGTC CTCAAGATCC CATTTAGGAG AATCCATTTG 
    ACCGGAGATG AGAAGCATTT TGACACATAC GACACCAGTG GTCCACAAAA 
    CATTAGTCCA AGGATTGGAC TTCCAAAGAT AAGGAAGGAG TGGATTGACA 
    GGAGGGAGAA GTTAGGTGGT CCTCGATACA CACAAATGTA TTACGCTAAG 
    CAGGGAATCA TAACAGAGGA GATGTTGTAC TGTGCCACAC GTGAGAACCT 
    TAGTCCTGAA TTTGTCCGGT CAGAGGTTGC CCGTGGACGA GCTATAATTC 
    CTTCCAACAA GAGGCACCTG GAATTGGAAC CCATGATTGT TGGACGAAAC 
    TTCCTTGTAA AAGTGAATGC AAACATTGGG AATTCTGCTG TTGTGAGCTC 
    CATCGAGGAG GAAGTACACA AGCTCCAGTG GGCTACAATG TGGGGAGCTG 
    ATACTGTCAT GGACCTTTCA ACAGGGCGTC ATATCCATGA GACCCGGGAA 
    TGGATCCTTC GTAATTCTTC AGTCCCTATT GGGACGGTGC CTATTTACCA 
    AGCACTTGAG AAAGTTAATG GTATTGCTGA AAATCTAAGC TGGGAAGTCT 
    TTAGAGATAC TTTAATCGAA CAAGCTGAGC AGGGTGTTGA TTACTTCACA 
    ATCCATGCTG GCGTGCTTCT TCGTTACATT CCTCTTACGG CAAAGAGAAT 
    GACCGGCATA GTTTCACGTG GTGGCTCTAT CCATGCAAAA TGGTGCCTAA 
    CATATCATAA GGAGAACTTT GCCTATGAGC ACTGGGATGA AATTCTTGAT 
    ATTTGCAATC AGTATGATGT GGCATTATCC ATTGGCGATG GTTTGAGACC 
    AGGTTCTATT TATGATGCAA ATGATAGTGC TCAGTTTGCA GAATTGCTGA 
    CTCAAGGGGA ACTCACACGC CGAGCTTGGG CAAAAGATGT GCAGGTAATG 
    AATGAAGGCC CAGGGCACAT TCCGATGCAT AAAATTCCTG AAAACATGGA 
    GAAGCAACTG GAGTGGTGCA ATGAAGCACC TTTCTACACA CTGGGGCCAC 
    TGACAACTGA TATTGCACCT GGTTATGATC ACATCACCTC CGCCATTGGT 
    GCTGCCAACA TTGGGGCTCT TGGCACTGCA CTTCTCTGTT ATGTAACACC 
    AAAGGAGCAC CTTGGATTGC CTAACCGTGA TGATGTTAAG ACAGGCGTGA 
    TATCCTACAA AATTTCTGCT CATGCTGCTG ATTTGGCAAA GGGCCATCCC 
    TATGCACAAG CATGGGACGA TACACTAAGC AAGGCAAGAT TTGAGTTTAG 
    ATGGTTGGAT CAATTTGCTC TATCTCTGGA TCCTGTGACC GCTATGTCTT 
    TCCATGATGA AACATTACCA TCGGAGGGTG CCAAAGTGGC ACATTTCTGC 
    TCAATGTGTG GCCCAAAGTT TTGTTCGATG AAAATCACAG AGGATATTAG 
    AAAATATGCT GATGAACATG GTTACGGGAC AGTGGAGGAA GCGGTGATAC 
    AAGGAATGAA TGCTATGAGT GCTGAGTTTT CAGCTGCAAG GAAAACAATC 
    AGTGGGGAGC AACATGGTGA AGCTGGAGGG GAGATATATG TTCCAGAAAG 
    CTATACAGCT CGCAAATAAG ATCGTCTTGG TGTCCATCTA CTCCGGGTGG 
    AGCGTTTATC AGCAGCACTC CTCACCATCC TATGTTAGGA GGTGGGGTGC 
    CTGTATTCTC AACGATCTGA AGGCCTCTTG GCCTGGATTG TTGTGAATTG 
    GGCTGAGAAA GTCCCTTTGA ACCTGAACAG GATAATGCCT GCGAAGGGAG 
    TGTGCATTTC TACTTTTATG TTTCCAGGGA ACTCTCAACA CAACCCCTTT 
    TTGGTGGGAG ATCGAGCTAT CCAATGTTCC TGAACGTGTG AGCTCAGCAG 
    CTGGATATAC CTGTTTCTTA CAACTGAGGT AACATGGTAA TAATACTTCA 
    TTTGATAAGT GGCATGCTGA CATTTCTCCA ACAGGAGAGG ATTTCTGCAG 
    ATACCACTTC GTAATGTCCC AGAACTGATT TAGTCATACA TTTATTATCC 
    GTGTAAATTT GCAAAGCGTT GGCCATGTCC TATGCAATTG ATTTTAAACC 
    ATCTATCTGC ACATATCTAA TTAAAGTATA AAACAATTTA TAAACTCTAC 
    ATAATGGACA TTTTAGCTGC ATGCCACTTG TCAATTGAGC ACACAATATA 
    CTGACTAAAT TCAATTTAAC TTGATCATGA TTCATGTGGA AGGTGTTTAT 
    TAGGAATTAA TTTATTGATA TGGCCAGAGA CTTGTTTATT TTTAGCTATT 
    TATTTGTCTT TCCCATAGAA ATGATCAAAT TTTGTACTTG CACCTTGTGT 
    AAGTATAATA GAATTATTTA GTCTGTTTTG GAGCATTCAT TAATACAATG 
    ATGCTCAGCC GCTCAGATCT TTGCGTAGCA TTATCCAAGA AAACAAGTCT 
    TTTTGTATCC CCTAGATAAT TTGAAAACAC CCATACATGC ACAATAGCAT 
    GTGAAAAAGA ACTTTAGCTA GGTTCTGTTG ACCGATTATG TTGTAGGATA 
    GGAATCATCT GCCTGTAGAA CATAATTTGG GCATTATCTT CTGATGTTAT 
    AATCATGTTT TTCTCAGCAA ACTATTACTC CGC

    Gene models with high sequence identity

    1. AT2G29630.3 [+] show detail - thiaminC
      E-value: 0; Score: 999.99

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Thiamine biosynthesis protein ThiC 4.2e-219
    HMMPfam Thiamine biosynthesis protein ThiC 2.3e-195
    HAMAP Thiamine biosynthesis protein ThiC 52.564

    See the detailed result >

    AT2G29630.3

    Model type
    Protein coding
    Short Description
    thiaminC
    Computational Description
    thiaminC (THIC); CONTAINS InterPro DOMAIN/s: Thiamine biosynthesis protein ThiC (InterPro:IPR002817).
    Link
    InterPro Scan - TAIR