K24632

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24632

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24632

Determination of introduced cDNA(s)

  • J013105I18 - Rice Full-length cDNAs - Original: J013105I18

    full reading [+] show sequence

    Nucleotide sequence: J013105I18 - full reading 
    GGCTCGAGCC GCAATGGCGC CTCCCTGCGG CGATGCCGCG GCGGCTGCCT 
    CCGCCGCGCC CGGCCTGGCC AACCTGCTCA TTCGCGAAGG CGCCGGCCTC 
    CCTTCGCGTC CCGAACGGTA CCCGCCATTC CGGCCCTGTA CTTCTGATTC 
    CTTTGCTCCA ATCTCTAGGG AAGGGGACGA TATTCCCCCC CAAAAAAAAT 
    CGGTTTCTTT ACGCAGCGGC GGCGGCGGCA ATGCGGCAGA GAGGGAGGAG 
    GGCGGTGCGA ACAGGAACGG GAAGAAGGAG AAGACCGGGG CGCAGAGGAT 
    CACCGGGTGG GGGCTCCGTG AGTTCAGCAA GATAGTTTCT AAGAAAGTTG 
    AGGCCAAAGG AAGAACCACA TATAATGAGG TTGCCGATGA GATTTTTGCG 
    GAGCTGAAGT CCATTACGCA GAACGGTCTG GAGTTTGATG AGAAGAATAT 
    TAGGCGGAGG GTATATGATG CTTTCAATGT GCTCATTGCA ATTCGTGTTA 
    TTGCAAAAGA TAAAAAGAAG ATAAAGTGGA TGGGCCTTAC TAATTATAGA 
    TACGAAAAGA TACAGAAGTT GGAGGAAGTT CACAAAGAAC TCATCACCAG 
    GATCAAGAAT AAGAAGAAGC TTCTCCAGGA AATTGAAAAG CAGTTTGATG 
    ACCTTCAGAA TATTACATTA CGCAACCAGG CTAGTCAGAG GCCAGCAGAA 
    AGTGTTAATG GCATCCTCCT TCCGTTCTTA TTGATCAAGA CATCCCGAAA 
    AGCAAGGGTG GAAATTGAGA TTTCGGAAGA TTCGAAGTTT GCACGGTTCG 
    ACTTCAACGG TGCACCATTC ACCATGCATG ATGATGTATC AATCCTTGAA 
    GCCATCAGGC GTAACAAAGG AAGAGCTGGC CTCTCCATTC ACCCTTAAGA 
    GGCACAAGAA TGTGACAAAA CCAATTGAAG TGTCAAAACT CAAAACTGGC 
    ACCACCAGTT TCTTTTGCAC AGTTATGTAT AGCTATAGCG TACCTTTCAG 
    TATGGAAACT CGACCTAGTT TATAGGACAG TCTCTCAGGC TTTTTAGCAG 
    ATATGACCTG CGAATTTTGC CTCTTTTTTG TGCCTAGCAG GTGAGTATGG 
    AATAGTTTTT TCTTGCGTGT GCTGCTATGT ATAAACTCAA TTGCCGTTTC 
    AATTCGAAGC TTGTGTACAA GCTC

    Gene models with high sequence identity

    1. AT5G03415.1 [+] show detail - Transcription factor DP
      E-value: 9e-43; Score: 171.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily "Winged helix" DNA-binding domain 4.1e-17
    HMMPanther DP RELATED, PLANT 2.6e-56
    HMMPanther Transcription factor DP 2.6e-56
    Coil coiled-coil 0
    HMMPIR Transcription factor DP, subgroup 1.4e-112
    Gene3D Winged helix-turn-helix transcription repressor DNA-binding 7.8e-29
    HMMPfam Transcription factor DP, C-terminal 4.5e-36
    HMMPfam Transcription factor E2F/dimerisation partner (TDP) 1.3e-22

    See the detailed result >

    AT5G03415.1

    Model type
    Protein coding
    Short Description
    Transcription factor DP
    Curator Summary
    Encodes a homolog of the animal DP protein. DP, in animals, forms a heterodimer with E2F and plays a central role in G1/S transition in the cell division cycle. DPB has been shown to interact with non phosphorylated E2Fc; when E2Fc is phosphorylated, the formation of the E2Fc/DPB heterodimer is lost.
    Computational Description
    DPB; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Transcription factor E2F/dimerisation partner (TDP) (InterPro:IPR003316), Transcription factor DP, C-terminal (InterPro:IPR014889), Transcription factor DP (InterPro:IPR015648), Transcription factor DP, subgroup (InterPro:IPR016556); BEST Arabidopsis thaliana protein match is: Transcription factor DP (TAIR:AT5G02470.3); Has 509 Blast hits to 501 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 249; Fungi - 7; Plants - 91; Viruses - 0; Other Eukaryotes - 162 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR