K24643

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24643

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24643

Determination of introduced cDNA(s)

  • J013071L19 - Rice Full-length cDNAs - Original: J013071L19

    full reading [+] show sequence

    Nucleotide sequence: J013071L19 - full reading
    GATCCGCCCC GCGAGCGAGC AGAGGCGGCG CTGCCGCTCG TCCCGCTGCT 
    TCCGCCGCAT CCACATCCTT CGCCGCCGCC GCCGCCGCCT GCGCCGATCC
    CCCCATCCAT CCCGCGAGCG AGCATCCTGC TGCTTCCGCC GCATCCTGAA
    ATTTGGCTTA ACCTTGATGT TTGTTTGTTC CCAAAAAGTT TGGGGGTGTT
    GAACTGAACC CCCCATGCCC CATGTTAGAT CCGCCCATGA ATGGATCATG
    ATTCACTCCA AAACACTATG GAGCATCCTG TTCCTGGAGA GGAGCATGAG
    GAGGATAACA GCATGAAAGT GGATGTGGCA TTTGATGGAG TGCACAGCCC
    GTTCCGGTAC AGGCACAAGA AAAGGTCCAA GGTTTGGGAG GAGTACAAGC
    CCATCTTTCT GAATGGGAAG GTTCAGTTTG CGGAGTGTCT CTACAGCCAT
    AATCGCCTCA GCTGCAAAGA TTCCAACGGC ACAAGCCATC TATGGCGGCA
    TCAGAAAATC TGCCCTGGCA AGGAGGAAGC GGCGCAGAGG CGACAGAAGG
    ATTCCTACTT CCCATGCGTT TTGGTGAATG AGAACGATCC AGTTTCACCC
    CACGATCCGG TCAATGATGT TATTACAGAG ACGCTTAGTG ATATAAACTC
    GGTAACACCC AGCGGTAACA GATTCACGTC AAAGGTGTGG AAGGAGTTTA
    CACCTGTCTA TATTGAGGGG AAACTCCAGG CTGCAGATTG CATTCACTGC
    CAGAAGCGCC TCAGTGCGAA TAAGTTCGGG GGGAGAAGCC ATCTGAGTCG
    ACATCTTATA ACCTGTGCAG GACGACGTGG ACGTGGAGGG GGCCAAATTC
    ATCAGAAGGG TTTATTTTAT CCTTCTAGCG TGCCTAGTTT GAAGTCCAGG
    GTGCAAGATG AGCTCTCACC TGCCTTGACA AATGGGAAGG TTCAGATCGC
    AGAATACTCT ATCAAGCTTC TGAGGGCAAG TAGCTCTGGT GACTCGACCC
    CTAAGCCCAT TCGAGTGGTA CCAGCAGAGC ATTCCGTGCC GACTCCAGAT
    TATACAAGCC TGATGAAACA GAGGACCTCA TTTGTGACCA CTCCAGCTGG
    TCAGGAAACA TCTGATCCAG ACCTAGTCGG GATGATAGCT TTGCATGGTT
    ATCCTTTGTC AATTGTGGAG CACGAAGAAA TGATGAGATT TGTAAAGAAA
    CTCAACCCTG TGGTCAATTT AGTCTCTCGC AATGCTATGG AAGAACATTG
    CTTGACACTA TTTCAGGAGG AAAAGGAAAA TATAAAGGGT AAAATTGCAC
    ATTTTTCCCG ACGTGTCTCT CTGTCAGCAA GCATCTGGAC TCCTGATGGA
    CCTGAGACAA CAGTAAATTA CCTCTGTTTG ACAGCACATT ATATTGATGA
    AGACTGGAAA GTTCATAGGA TAATAATAAA ATTTGGAATG TTTTGGTCCG
    CGCCTGCTGA TTTGGGAAGG ATGATACATT GTATGGAAGC CTGTGTCCCA
    GAGTCTGAGA GCGGATCATA TAATGTCATA TTGGATGCCA TTAGAGATTG
    GAATCTTGAT CAGAAGCTTT TAAGCTTGAC TTCTGTTGGT GAAGTTAGGG
    GTGACACCAA TACTTCATTG CTAAAGGAAA TGCTTATAGA GAAGAAGTGC
    CTTCCTATTG GAGGGACGCT ATTCAATGTT GCCTGTGTGG ACTATGTCCT
    TAACAGTATT GTTTTCAAAG TGCAAGCAGA TATACTTCGT CTTGTTGGTG
    ACATAGTAAT GGATTTTTTA GTGTCATTGA CCCAGCAGCA GCTTCTGGAA
    GTTATTTCAC AGACGGGTCT AAAGTGTCCA CAAGAAGATG CTAAGTGGTG
    GCACAAACTT TATTTTAGAC TTGAAGTGCT TTTGCATTTC AAGAAGTCAT
    TTCCTTCTGA AGAAAGGGTG TCCCCAGAAG ATACAAAAAC TGCTGAGTCC
    GTTTGCAAGA TTTTGAGGAC AATTTATCGT GTCATTGAAG TTATTTCCAG
    CCCTAGCTCT CCGACAGCAA ATATATATTT TAACGAGATA TGGAAAGTCA
    GGACAGTTTT GCAAGAAGAA GCATTAAATG ATCACAGAGA AATAGCTACA
    GTGGCTATGG TGATGCAGGA AGCATTCAAT GAGTATTGGC AAAATTCATA
    TTTGTGGTTG GCCATACCTG TTGTGCTAGA CCCTAGATTC AAATTCAGTT
    TCATTGAGTT TCGTCTGAAA CGAGCTTTTG GAACAGATTC GGCAAGCTAC
    CTATCTGTAA TACGTGAAAC AGTCCGGGAA CTCTTCAATG AATACTGCCA
    TTCTTTGAAT CAGGCAAGTG ATGTTGTTTC AAACAGTGAA GCTTTGTGTG
    CAGATGATAA TGATTCGTTG GAAGATTGGG ATCAGCATCT CCATGAACAA
    GCAAGTCGTC AGCTATCTTC GGAGCTTGAT GATTACCTTG AAGATGGTTT
    AGTTCCTAGA AAGGATGATT TTGATATTTT AAACTGGTGG ATGACTCATA
    GTACTAAGTA CCCAACACTT GCAACTATTG CACGGGACAT CTTAGCCATG
    CCAGCATCTG CTGTTCAATC TGAAGCAGCA TTCAGTAGCA GTGGACCAGT
    AATTCCAAAA CACCAGAGTA CATTAAACAT CAGAACAATC GAGGCACTTG
    TTTGTACTCG AGATTGGATG AGATAAAACT GAATCTTGTT TCCTTGTTTT
    CCTGTATTGG AAGTTTGGAA CCATACTATA TGATCAGATG AATGTCAGAA
    ACCAAAGCCT ACAATGTTAG TAACTTTATA TGGAAGTACA TATTAGAATC
    TTACATGTTC ATGTGCAATC TTAGCAGCTA CATCACTTTA GGATGTTTTA
    GATCATGCTT GTAATTTGTA ATTGAAACAT TTTGATCCCA TTGGCAATCA
    TGAATATCTT GTTCTGCG

    Gene models with high sequence identity

    1. AT3G42170.1 [+] show detail - BED zinc finger ;hAT family dimerisation domain
      E-value: 7e-72; Score: 269.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, BED-type predicted 9.096
    HMMPfam HAT dimerisation 6.4e-25
    HMMPfam Zinc finger, BED-type predicted 0.00000012
    HMMPfam Zinc finger, BED-type predicted 0.00000026
    HMMPanther BED FINGER-RELATED 0.00016
    HMMSmart Zinc finger, BED-type predicted 0.0000000000058
    HMMSmart Zinc finger, BED-type predicted 0.000000035

    See the detailed result >

    AT3G42170.1

    Model type
    Protein coding
    Short Description
    BED zinc finger ;hAT family dimerisation domain
    Curator Summary
    transposase-like gene with conserved domains from the family of hAT transposases that includes hobo from Drosophila melanogaster, Activator (Ac) from maize, and Tam3 from snapdragon but lacks several amino acids known to be essential for Ac transposition5. The DAYSLEEPER gene lacks 8 bp duplications and TIRs (a common feature of transcriptionally silent hAT transposases), however, DAYSLEEPER expression was detected, and several expressed sequence tags are available. The expression seems to be under the control of factors determining the circadian rhythm. DAYSLEEPER was isolated as a factor binding to a motif (Kubox1) present in the upstream region of the Arabidopsis DNA repair gene Ku70. Mutant plants lacking DAYSLEEPER or strongly overexpressing this gene do not develop in a normal manner.
    Computational Description
    BED zinc finger ;hAT family dimerisation domain; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656); BEST Arabidopsis thaliana protein match is: BED zinc finger ;hAT family dimerisation domain (TAIR:AT1G18560.1); Has 1233 Blast hits to 1128 proteins in 97 species: Archae - 0; Bacteria - 4; Metazoa - 232; Fungi - 219; Plants - 755; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR