K24648

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24648

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24648

Determination of introduced cDNA(s)

  • J023149B10 - Rice Full-length cDNAs - Original: J023149B10

    full reading [+] show sequence

    Nucleotide sequence: J023149B10 - full reading 
    GAGAGTGGTG AAGCGTTGGA AGGGATGCTG ATGTCGCGGC GGCTCGTGCC 
    CGCCGCCGCC GCGGCGAGGA TGGCGTCGTC GTCGTCGTCG GCGGCGGCGG 
    CGGCGGTGTC TGGTGGTGCG GAAGGTGGAG GTGGGGAGGG GAGGGGAGGG 
    GACACGCTGG GGAGGAGGCT GCTGAAGCTG ATCTACCCGA AGCGGAGCGC 
    GGCGGTGGTG CTGCGCCGGT GGGCGGAGGA GGGGCGCACC GTGCAGAAGT 
    ACCAGCTCAA CCGCGTCGTC CGCGAGCTCC GCAAGTACCG CCGCTTCAAG 
    CACGCCCTCG AGATATGCGA GTGGATGAGG ACGCAGCCGG AGATGAGGCT 
    GCTTCCCGGG GACCACGCCG TGCACCTCGA CCTCGTGGCC AAGGTCCGGG 
    GGCTCCCCAG CGCCGAGAAG TTCTTCGAGG ACATGCCGGA GCGCGCCAAG 
    GGGCCGTCCA CCTGCAACGC GCTGCTCCAC GCCTACGTGC AGCACGGCCG 
    GCGTGACAAG GCGGAGGCAA TGCTGGAGGA GATGGCCAAG GCTGGGTACC 
    TCACCTGCGC GCTGCCGTTC AACCACATGA TGTCGCTCTA CATGTCGAGC 
    GGCGAGCTTG AGAAGGTCCC GGAGATGATC AAGGAGCTCA GGAGGTACAC 
    CATCCCTGAC CTGGTCACCT ACAACATATG GCTGACATAC TGCTCGAAGA 
    AGAACAGCGT GAAAGCCGCG GAGAAGGTCT ACGATCTGAT GAAGGATGAG 
    AGGGTGGTTC CTGACTGGAT GACATTCAGC TTGCTGGGAA GCATTTACAT 
    CAATGCCGGG CTTCATGTCA AAGGCCGGGA CGCGCTGGTG GAGATGGAGA 
    AGAGGGCCTC TCGGAAGGAG AGAGCCGCGT ACTCCTCATT GCTCACCCTG 
    TATGCAAGCT TGTCGGATAG AGGTAACTTG GACAGGGTGT GGAGGAAGAT 
    GAGAGAAACC TTCAGAAAGT TCAGTGACAC CGAGTACAAG TGCATGCTCA 
    CTTCGCTCAC AAGGTTTGGC GATATCGCAG AAGCAGAGAG CTTTTACAGC 
    GAATGGGAGT CCGCCTCAGG AACACGCGAT TCGAGGATCC CGAACACGAT 
    CCTCGCATTT TACATCAAGA ACGGCATGAT GGAAAAGGCT GAGGGTTTCC 
    TCGATCACAT TGTGCAGAAG GGTGTCAAGC CAAGCTATAG CACTTGGGAA 
    CTGTTTGTCT GGGGCTATCT CAGCGATGGC AGAATGGACA AAGTTCTTGA 
    GTGCCTGAAG AAAGCCCTGT CATGTCTGGA GAAATGGGAT CCAAACCCTC 
    AACTCGCGAC GGCGATATAC TCTCAGATTG AGGAGAAAGG CGACATCGAA 
    GCTGCAGAGA AGCTCCTGGT CATGTTCAGA GAAGCAGGAT ATGTCACGAC 
    CGAGATCTAT AACTCGGTCT TGCGCACTTA TGCGAAGGCT GAGCTGATGC 
    CGCTGATAGT TGATGAACGC ATGGATCAGG ATAAGGTCTC AATGGACGAT 
    GAAACAAGGA GTTTGCTGAG ATTGACAAGC AAATACCCGA TTGGTGAAGT 
    TTCGACATTG ATGTCTTGAG ATGTTGCAAG TTCGGGCAAT GAATTTTCAG 
    TCCTACAGGA TGCAATGTGC TGTTAATTGA TTTCCAATCA CAAGTTATTG 
    CTCCCCTGTA TTTGCAGTTT TGAACTCGAA AGCAAAGTAG CGAGGATAGA 
    CTGATACAAG GTTAGTGGGC TGGAATTTGT GAATATTAGC AAGTTCGGTC 
    ATGAGTCTGT ATAAGCACTA CCTGCTCCCT TGCCTTCTGA CTATCTGGCG 
    CGGCTAGATA GCACAATTCG CAACAAGTTA CTGCTCTTTG TTTTTGAAAA 
    CAGATACAGA TAACAAATCG TGCGC

    Gene models with high sequence identity

    1. AT4G02820.1 [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
      E-value: 9e-136; Score: 481.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Pentatricopeptide repeat 0.00016
    HMMTigr Pentatricopeptide repeat 5.1e-07
    HMMTigr Pentatricopeptide repeat 0.42
    HMMTigr Pentatricopeptide repeat 0.0084
    superfamily TPR-like 1.5e-18
    ProfileScan Pentatricopeptide repeat 10.611
    ProfileScan Pentatricopeptide repeat 10.348
    ProfileScan Pentatricopeptide repeat 6.16
    ProfileScan Pentatricopeptide repeat 5.7
    ProfileScan Pentatricopeptide repeat 5.634
    ProfileScan Pentatricopeptide repeat 6.336
    ProfileScan Pentatricopeptide repeat 9.635
    ProfileScan Pentatricopeptide repeat 5.678
    ProfileScan Pentatricopeptide repeat 5.481
    HMMPfam Pentatricopeptide repeat 1.4e-05
    HMMPfam Pentatricopeptide repeat 0.048
    HMMPfam Pentatricopeptide repeat 0.0019
    HMMPfam Pentatricopeptide repeat 0.01
    HMMPanther DNA-BINDING PROTEIN 1.8e-130
    HMMPanther PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1.8e-130

    See the detailed result >

    AT4G02820.1

    Model type
    Protein coding
    Short Description
    Pentatricopeptide repeat (PPR) superfamily protein
    Computational Description
    Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G02150.1); Has 15018 Blast hits to 7498 proteins in 232 species: Archae - 0; Bacteria - 55; Metazoa - 87; Fungi - 92; Plants - 14442; Viruses - 0; Other Eukaryotes - 342 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR