K24706

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24706

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24706

Determination of introduced cDNA(s)

  • J013120K02 - Rice Full-length cDNAs - Original: J013120K02

    full reading [+] show sequence

    Nucleotide sequence: J013120K02 - full reading 
    GTCTTCCCCG CCGCCGCCCG AGCAACACTA AACCCCCCAT CTCCGCCGCT 
    CCCGCCTCCC CCTCGCCGCC GCCGCCTCCC AGATCTCGCC ATGGCGTCGG 
    AGAAGAAGCA GGCGAACCCG ATGCGGGAGA TCAAGGTGCA GAAGCTTGTC 
    CTCAACATCT CCGTCGGCGA GAGCGGAGAT CGCCTCACCC GCGCCTCGAA 
    GGTGCTGGAG CAGCTGAGTG GGCAGTCACC GGTGTTCTCC AAGGCGAGGT 
    ACACTGTGAG GTCGTTCGGC ATCCGGCGTA ATGAGAAGAT CGCGTGCTAC 
    GTGACAGTGC GTGGTGAGAA GGCAATGCAG CTCCTGGAGA GTGGCCTGAA 
    GGTGAAGGAG TACGAGCTGC TGAGGAGGAA CTTCAGTGAG ACTGGATGCT 
    TTGGTTTTGG TATCCAGGAG CACATTGATC TTGGCATCAA GTATGACCCA 
    TCCACTGGTA TTTACGGTAT GGACTTCTAC GTCGTTCTTG AGCGTGCTGG 
    GTACCGTGTT GCGCGGCGCC GTAGGTGCAA GTCCCGTGTT GGTATCCAGC 
    ACAGGGTCAC CAAGGAGGAT GCCATGAAGT GGTTCCAGGT CAAGTACGAG 
    GGTGTCATCC TCAACAAGGC CCAAGCCAAC ACCTCCTAAG CGTCACTAGT 
    GCCTAGTTCT CTTTAGAACT TGAGTTATTT GGATGTTGGA TTTGTATGCT 
    TCTTAAAACT AAAGATGTTT TGTTATTTTG TCAACTTTGA GTTGGATCAG 
    TTTTGGTGGT ATGTACTTTC ATCTTAATGC TCAGATCTAT TTACTCTCTT 
    AGCAGAGATA GATATATGAT TTGACATATG CTACGAACTG CTGTCAATGT 
    TGATAAAATG AAAAGAGAAT GGTTT

    Gene models with high sequence identity

    1. AT5G45775.2 [+] show detail - Ribosomal L5P family protein
      E-value: 3e-84; Score: 308.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Ribosomal protein L5, conserved site 0
    HMMPanther 60S RIBOSOMAL PROTEIN L11 8e-117
    HMMPanther Ribosomal protein L5 8e-117
    HMMPIR Ribosomal protein L5 1.1e-68
    superfamily Ribosomal protein L5 6.6e-59
    HMMPfam Ribosomal_L5_C 5.6e-22
    HMMPfam Ribosomal_L5 1.1e-20
    Gene3D Ribosomal protein L5 2.8e-60

    See the detailed result >

    AT5G45775.2

    Model type
    Protein coding
    Short Description
    Ribosomal L5P family protein
    Computational Description
    Ribosomal L5P family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, vacuole; EXPRESSED IN: male gametophyte, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein L5 (InterPro:IPR002132), Ribosomal protein L5, conserved site (InterPro:IPR020929), Ribosomal protein L5, N-terminal (InterPro:IPR020927), Ribosomal protein L5, C-terminal (InterPro:IPR020928); BEST Arabidopsis thaliana protein match is: ribosomal protein L16B (TAIR:AT4G18730.1); Has 7854 Blast hits to 7854 proteins in 2814 species: Archae - 312; Bacteria - 5083; Metazoa - 254; Fungi - 163; Plants - 278; Viruses - 0; Other Eukaryotes - 1764 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR