K24707

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24707

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24707

Determination of introduced cDNA(s)

  • J013145O08 - Rice Full-length cDNAs - Original: J013145O08

    full reading [+] show sequence

    Nucleotide sequence: J013145O08 - full reading
    GGTCGGCTCG CCTCGGCTTC CTTCGTTGGT CCGCACCTTC TCCCCTCACC 
    CGCCGCCGGG GATCCGCTCC GCCGTCTCGC CTCCCGCCCC GTGGATCCAC
    CTTGCCGCTC CAGATGGAAT CCTGCCCTTC GGTGAAGAAC ATCCTTCTGC
    TGGATTCCGA GGGGAAGCGC GTCGCCGTCA AGTACTACAC GGATGATTGG
    CCTACTCTCT CGGCGAAGCT GGCCTTCGAG AAGTCGGTGT TCGTCAAGAC
    CCAGAAAGCC ACTGCCGGAG CAGAAGCTGA GATTGTAATG TTTGATGGCC
    ACATTGTGGT GTATAAGTTC ATCCAAGACC TCCATTTTTT TGTTACTGGA
    GGAGAGGAGG AGAATGAGCT TATTTTAGCA TCGGTCCTTC AAGGATTCAC
    TGATGCAGTT GACATTATTC TCAGAAATAA CGTCGACAAA AGAACAGCAC
    TCGAAAATCT GGATCTCATC CTATTGTGCC TCGATGAAAT TGTTGATGGA
    GGGATTGTCC TGGAAACAGA AGGAAGTGTG ATAGCTGAAA AGTTGTCAGC
    ACATGGAATA GAAGGTGCTA CTTCACTCGC TGAGCAGACT ATAGTTCAAG
    CCCTAACAAC AGCAAGAGAG CACTTGACCA AATCTCTTCT TATGTGATGT
    GCTCTGCTTT TGGAGCTGAA GATGGAGTAG CATCCCGTTG TTACATCTCT
    AGGACTGATA CGTTCATTGC AATAGAAACG ACGGAACAGA ATATCTGAAT
    CCATTTGCGT GTAGAGTGGC ACGTTCCCTT CATTGACACT ATCTGGTTCA
    GTTTTGCGAG TATTTAAAAA ACTGCACAAA CAAGATTGTG AACGGTGATT
    GTTTCAATTT TGATTGTTCT TTGTTTTGTA GATTTATATA TATGTTGTTG
    TGCAGTGGAT CAATATATTG CTTATGGAGA TGAATGTCTT TCTTTAACTC
    GCTTTTGGTA TATTGAATT

    Gene models with high sequence identity

    1. AT1G60970.1 [+] show detail - SNARE-like superfamily protein
      E-value: 2e-53; Score: 206.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther ZETA-COAT PROTEIN 5.2e-103
    Gene3D no description 5.7e-18
    HMMPfam Clat_adaptor_s 1.2e-21
    superfamily Longin-like 5.2e-32

    See the detailed result >

    AT1G60970.1

    Model type
    Protein coding
    Short Description
    SNARE-like superfamily protein
    Computational Description
    SNARE-like superfamily protein; INVOLVED IN: intracellular protein transport, transport; LOCATED IN: clathrin vesicle coat; EXPRESSED IN: leaf whorl, sperm cell, pedicel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT3G09800.1); Has 621 Blast hits to 621 proteins in 219 species: Archae - 0; Bacteria - 0; Metazoa - 227; Fungi - 139; Plants - 149; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR