K24710

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small) decreased length (PATO:0000574) (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24710

Determination of introduced cDNA(s)

J013074J04 - Rice Full-length cDNAs - Original: J013074J04

full reading [+] show sequence

GACTAGTGGT GGAGAGACGA AACACAGGAC GCCGAAATTC TCTCGCCCAC 
GGATTCCCCT CCACTCGCAC TGTCAGTCTG TCACTCTCTC CGCCGCCGGC 
CGCCGAATCT CCGGCGCCGA TGGAGGCAGA CCCCAATCCG ATGGTGGTGC 
TGCACGCCTG CCTCGGCGTG GGCCACCTCA TCCCCATGGT TGAACTCGCG 
AAGCTCCTTC TCCGCCGCGG CCTCGCCGTC GTCATCGCCG TGCCGACCCC 
GCCGGCCTCC ACCGCCGACT TCTTCTCCTC GTCCGCCCCC GCGGTCGACC 
GCATGGCGGC CGCCAACCCT TCCATCTCCT TCCACCACCT CCCGCCGCCC 
GAGTACCCCG ACCCGGATCC CGACGCCTTC CTGCAGATGC TCGACACGAT 
GCGTCTCACC GTGCCACCCC TCCTCGCCTT CCTCCGCTCC CTCCCCTCGG 
TCGCGGCTCT CGTGCTCGAC CTGTTCTGCG TCGACGCACT CGACGCCGCC 
ACGGCGGCCG GCGTCCCGGC GTACTTCTAC TACACCTCCT CCGCCGGCGA 
CCTCGCCGCG TTCCTCCACC TCCCGCACCA CTTCGCCACC ACGGAAGGCA 
GCTTGAAGGA CATGGGTAAG ACGCCCCTCC GCTTTCCCGG CGTCCCTCCG 
ATCCCGGCCT CCGACATGCC GCACACCGTG CTCGACCGCG CGGACCGGAC 
CTGCGCTACG CGGCTGGGGC ACTACGGGCG GATCCCGGAG GCGCGGGGTA 
TTCTGATTAA CTCCTACGAA TGGCTGGAGG CGAGGTCCGT GAGGGCGCTC 
AGGGAAGGCG CCTGCATCCC CGACCGCCCC ACGCCGCCGG TGTACTGCAT 
CGGGCCGTTG ATGGCGAAAG GCGAGGAGGC GGCGAACGGG GAACGCCACG 
CATGCCTCTC GTGGCTGGAC GCGCAGCCGG AGAGGAGCGT CGTGTTCCTC 
TGCTTCGGCA GCTTGGGCGC CGTCTCGGTG AAGCAGCTGA AGGAGATCGC 
TCGTGGGCTC GAGAATTCCG GCCACCGTTT CCTCTGGGTG GTGCGTAGCC 
CGCCGCAGGA TCCGGCCAAG TTCTTCCTGC CGCGTCCGGA GCCTGACCTG 
GGAATGCTGC TCCCGGAGGG GTTCACGGAG AGGACGCGGG ACAGGGGAAT 
GGTGGTGACG TCGTGGGCGC CGCAGGTGGA GGTGCTCCGG CACGCCGCGA 
CCGCCGCGTT CGTGACGCAC TGCGGGTGGA ACTCCGTCCT GGAGGCGGCG 
TCGGCCGGAG TGCCGATGCT GTGCTGGCCG CAGTACGCCG AGCAGAGGAT 
GAACAAGGTG CTCTTGGTGG ATGGCATGCA GCTCGGAGTG GTGATGGACG 
GCTACGATGA GGAGCTGGTC AAGGCCGAGG AGGTGGAGAA GAAGGTGAGG 
TTGGTCATGG AGTTCGAGGA AGGGAAAAAA CTCAGGGATA GACTGACAAT 
GGCGAAGGAA ATGGCCGCGA AGGCGCTGGC AGACGGCGGG TCGTCGTCGT 
TGGCGTTCAC CGAATTTCTG AAGGATTTGA ACTTTGGAAA CACTACAAAG 
GAAAAAGCGT AGAAGACGAA CATTGAGCAG TGCAAACGAT CAAGCACAAA 
AGATGAACAT TGAGTTGGAA TGATTTATAT TGCTGCTGGA ATGTGACAAA 
ATCACATATC TGCATTATTT ACCCGCTGTG AACTGTGCTA TTTTTCTGTA 
TTTCTGATGT GAGCAGAAGG TGTGAGAGTT TCTTCAGGCT GATTAGCTGC 
TTCAGCAGTC AGCACTTGTA GATTACACTC TGGAGCCGTG CTTACATGAT 
GGAATAGTAT TATGCTCTAT C

Gene models with high sequence identity

AT3G16520.3 [+] show detail - UDP-glucosyl transferase 88A1
E-value: 1e-86; Score: 318.00

InterPro Scan Digest

Program	Description	E-value
FPrintScan	PRICHEXTENSN	3.2e-09
FPrintScan	PRICHEXTENSN	3.2e-09
FPrintScan	PRICHEXTENSN	3.2e-09
FPrintScan	PRICHEXTENSN	3.2e-09
FPrintScan	PRICHEXTENSN	3.2e-09
PatternScan	UDP-glucuronosyl/UDP-glucosyltransferase	0
HMMPfam	UDP-glucuronosyl/UDP-glucosyltransferase	2.7e-27
HMMPanther	UDP-GLUCOSYLTRANSFERASE	2.8e-113
HMMPanther	UDP-glucuronosyl/UDP-glucosyltransferase	2.8e-113
superfamily	UDP-Glycosyltransferase/glycogen phosphorylas	3.4e-49
Gene3D	no description	2.6e-13

See the detailed result >

AT3G16520.3

Model type: Protein coding
Short Description: UDP-glucosyl transferase 88A1
Computational Description: UDP-glucosyl transferase 88A1 (UGT88A1); FUNCTIONS IN: in 6 functions; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 72B3 (TAIR:AT1G01420.1); Has 7523 Blast hits to 7470 proteins in 455 species: Archae - 0; Bacteria - 255; Metazoa - 2062; Fungi - 26; Plants - 5000; Viruses - 120; Other Eukaryotes - 60 (source: NCBI BLink).
Link: InterPro Scan - TAIR