K24712

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24712

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24712

Determination of introduced cDNA(s)

  • J033044F04 - Rice Full-length cDNAs - Original: J033044F04

    full reading [+] show sequence

    Nucleotide sequence: J033044F04 - full reading 
    GAGAAACCCG AGCATTCCAC CGTGCGCGAA AGCGCCCCGT CACCATGCGC 
    CTCCAACTCT GCTTCCTCTG CTTCGGCTTG CTTCTCGTCT CCTCCTCGCT 
    GCAATGCCAC GGGCTGCTTC TGCCGCTCAC CAACACCCTC TCCTCGCTCC 
    GCCCAGCCAA TGACACAGCC ACCATCCACC GCCTCCTCCG CTCCTCCTCC 
    CTCCGTTCCG CCGCGCGCCA CCGCGGCCGC CGCCACGGCA CGCGCCGCGC 
    GCCTCCTCCT CCACGGCACC GCCAGCTCTC GCTGCCGCTC GCGCCGGGGA 
    GCGACTACAC GCTGTCGCTC TCGGTCGGCC CGCCTTCCAC GGCCAGCTCC 
    GTGTCGCTCT TCCTCGACAC CGGCAGCGAC CTCGTCTGGT TCCCCTGCGC 
    GCCGTTCACC TGCATGCTCT GCGAAGGCAA GGCGACGCCT GGTGGCAACC 
    ACTCCAGCCC GCTCCCCCCA CCGATCGACT CCCGCCGCAT CTCCTGCGCG 
    TCGCCGCTCT GCTCCGCGGC GCACTCCTCC GCGCCCACCT CCGACCTGTG 
    CGCCGCGGCG CGGTGCCCGC TCGACGCGAT CGAGACCGAC TCGTGCGCGT 
    CCCACGCGTG CCCGCCGCTG TACTACGCGT ACGGGGACGG CAGCCTCGTC 
    GCGAACCTGA GGCGCGGACG CGTCGGGCTG GCCGCGTCCA TGGCCGTGGA 
    GAACTTCACC TTCGCCTGCG CGCACACGGC GCTCGCCGAG CCCGTCGGGG 
    TGGCCGGGTT CGGGCGCGGC CCGCTCTCGC TCCCGGCCCA GCTCGCCCCG 
    TCGCTCTCCG GCAGGTTTTC CTACTGCCTC GTCGCCCACT CATTCCGCGC 
    CGACCGGCTC ATCCGGTCAA GCCCGCTGAT CCTCGGCCGC AGCACGGACG 
    CCGCCGCGAT CGGCGCCTCC GAGACGGACT TCGTGTACAC GCCGCTGCTG 
    CACAACCCGA AGCACCCCTA CTTCTACTCG GTGGCGCTCG AAGCCGTCTC 
    GGTGGGCGGG AAGAGGATAC AGGCCCAGCC CGAGCTCGGG GACGTGGACC 
    GCGACGGCAA CGGCGGGATG GTGGTGGACT CGGGCACGAC GTTCACCATG 
    CTGCCGAGCG ACACGTTCGC GCGGGTGGCC GACGAGTTCG CGCGCGCGAT 
    GGCCGCGGCG CGGTTCACGC GCGCCGAGGG CGCGGAGGCC CAGACAGGGC 
    TCGCCCCCTG CTACCACTAC TCCCCGTCGG ACCGCGCCGT GCCGCCGGTG 
    GCGCTCCACT TCCGTGGCAA CGCGACGGTG GCGCTGCCGC GGAGGAACTA 
    CTTCATGGGG TTCAAGAGCG AGGAGGGGCG GAGCGTCGGG TGCCTGATGC 
    TGATGAACGT CGGCGGGAAC AACGACGACG GCGAAGACGG TGGTGGTCCG 
    GCAGGGACGC TTGGCAACTT CCAGCAGCAG GGGTTCGAGG TGGTGTACGA 
    CGTGGACGCC GGTCGCGTCG GCTTCGCCCG CCGCCGGTGT ACGGACCTGT 
    GGGACACGCT CTCGCGCCGG TGAGCTGCTG GTGCGGACTT ACGATGATCG 
    AGTATGATTT GTCCTAAGCT CTCAGGTGTA CAGAGTACAG ACTAGTGGTA 
    GCTGCCATGC ATGTATCTGT AGGATTGTTC TTCTTGCGAC GTTACTGTTT 
    TGTTTCTCGT GTTTCTGCTT GTAAATCTGT CTTGCTCTGC CCGTATGGAA 
    CCTGATTAAC GATTAACCGA TGGCAACGAC TCGGACGGCG AGACATGTCT 
    CCACACGGGT TTTTGCTACC AACAGAGAAA CTGCAGTAAA CAAACTCGAA 
    CCTTTGGC

    Gene models with high sequence identity

    1. AT4G16563.1 [+] show detail - Eukaryotic aspartyl protease family protein
      E-value: 1e-105; Score: 381.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Peptidase aspartic, active site 0
    HMMPanther CHLOROPLAST NUCLEIOD DNA-BINDING-RELATED 1e-78
    HMMPanther Peptidase A1 1e-78
    Gene3D Peptidase aspartic, catalytic 0.0000000099
    Gene3D Peptidase aspartic, catalytic 3.1e-42
    superfamily Peptidase aspartic 3.5e-73
    HMMPfam Peptidase A1 0.00000009

    See the detailed result >

    AT4G16563.1

    Model type
    Protein coding
    Short Description
    Eukaryotic aspartyl protease family protein
    Computational Description
    Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plant-type cell wall; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT5G45120.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR