K24712

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24712

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24712

Determination of introduced cDNA(s)

  • J033044F04 - Rice Full-length cDNAs - Original: J033044F04

    full reading [+] show sequence

    Nucleotide sequence: J033044F04 - full reading
    GAGAAACCCG AGCATTCCAC CGTGCGCGAA AGCGCCCCGT CACCATGCGC 
    CTCCAACTCT GCTTCCTCTG CTTCGGCTTG CTTCTCGTCT CCTCCTCGCT
    GCAATGCCAC GGGCTGCTTC TGCCGCTCAC CAACACCCTC TCCTCGCTCC
    GCCCAGCCAA TGACACAGCC ACCATCCACC GCCTCCTCCG CTCCTCCTCC
    CTCCGTTCCG CCGCGCGCCA CCGCGGCCGC CGCCACGGCA CGCGCCGCGC
    GCCTCCTCCT CCACGGCACC GCCAGCTCTC GCTGCCGCTC GCGCCGGGGA
    GCGACTACAC GCTGTCGCTC TCGGTCGGCC CGCCTTCCAC GGCCAGCTCC
    GTGTCGCTCT TCCTCGACAC CGGCAGCGAC CTCGTCTGGT TCCCCTGCGC
    GCCGTTCACC TGCATGCTCT GCGAAGGCAA GGCGACGCCT GGTGGCAACC
    ACTCCAGCCC GCTCCCCCCA CCGATCGACT CCCGCCGCAT CTCCTGCGCG
    TCGCCGCTCT GCTCCGCGGC GCACTCCTCC GCGCCCACCT CCGACCTGTG
    CGCCGCGGCG CGGTGCCCGC TCGACGCGAT CGAGACCGAC TCGTGCGCGT
    CCCACGCGTG CCCGCCGCTG TACTACGCGT ACGGGGACGG CAGCCTCGTC
    GCGAACCTGA GGCGCGGACG CGTCGGGCTG GCCGCGTCCA TGGCCGTGGA
    GAACTTCACC TTCGCCTGCG CGCACACGGC GCTCGCCGAG CCCGTCGGGG
    TGGCCGGGTT CGGGCGCGGC CCGCTCTCGC TCCCGGCCCA GCTCGCCCCG
    TCGCTCTCCG GCAGGTTTTC CTACTGCCTC GTCGCCCACT CATTCCGCGC
    CGACCGGCTC ATCCGGTCAA GCCCGCTGAT CCTCGGCCGC AGCACGGACG
    CCGCCGCGAT CGGCGCCTCC GAGACGGACT TCGTGTACAC GCCGCTGCTG
    CACAACCCGA AGCACCCCTA CTTCTACTCG GTGGCGCTCG AAGCCGTCTC
    GGTGGGCGGG AAGAGGATAC AGGCCCAGCC CGAGCTCGGG GACGTGGACC
    GCGACGGCAA CGGCGGGATG GTGGTGGACT CGGGCACGAC GTTCACCATG
    CTGCCGAGCG ACACGTTCGC GCGGGTGGCC GACGAGTTCG CGCGCGCGAT
    GGCCGCGGCG CGGTTCACGC GCGCCGAGGG CGCGGAGGCC CAGACAGGGC
    TCGCCCCCTG CTACCACTAC TCCCCGTCGG ACCGCGCCGT GCCGCCGGTG
    GCGCTCCACT TCCGTGGCAA CGCGACGGTG GCGCTGCCGC GGAGGAACTA
    CTTCATGGGG TTCAAGAGCG AGGAGGGGCG GAGCGTCGGG TGCCTGATGC
    TGATGAACGT CGGCGGGAAC AACGACGACG GCGAAGACGG TGGTGGTCCG
    GCAGGGACGC TTGGCAACTT CCAGCAGCAG GGGTTCGAGG TGGTGTACGA
    CGTGGACGCC GGTCGCGTCG GCTTCGCCCG CCGCCGGTGT ACGGACCTGT
    GGGACACGCT CTCGCGCCGG TGAGCTGCTG GTGCGGACTT ACGATGATCG
    AGTATGATTT GTCCTAAGCT CTCAGGTGTA CAGAGTACAG ACTAGTGGTA
    GCTGCCATGC ATGTATCTGT AGGATTGTTC TTCTTGCGAC GTTACTGTTT
    TGTTTCTCGT GTTTCTGCTT GTAAATCTGT CTTGCTCTGC CCGTATGGAA
    CCTGATTAAC GATTAACCGA TGGCAACGAC TCGGACGGCG AGACATGTCT
    CCACACGGGT TTTTGCTACC AACAGAGAAA CTGCAGTAAA CAAACTCGAA
    CCTTTGGC

    Gene models with high sequence identity

    1. AT4G16563.1 [+] show detail - Eukaryotic aspartyl protease family protein
      E-value: 1e-105; Score: 381.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Peptidase aspartic, active site 0
    HMMPanther CHLOROPLAST NUCLEIOD DNA-BINDING-RELATED 1e-78
    HMMPanther Peptidase A1 1e-78
    Gene3D Peptidase aspartic, catalytic 9.9e-09
    Gene3D Peptidase aspartic, catalytic 3.1e-42
    superfamily Peptidase aspartic 3.5e-73
    HMMPfam Peptidase A1 9e-08

    See the detailed result >

    AT4G16563.1

    Model type
    Protein coding
    Short Description
    Eukaryotic aspartyl protease family protein
    Computational Description
    Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plant-type cell wall; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT5G45120.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR