K24749

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24749

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24749

Determination of introduced cDNA(s)

  • J013056N04 - Rice Full-length cDNAs - Original: J013056N04

    full reading [+] show sequence

    Nucleotide sequence: J013056N04 - full reading 
    GGATCAAAAG GCTTGAAGGG AAGAAGAGCA ACTCCAGCAG GTAGAAAGGC 
    CAGAAGCAAA GATGGCGATC TCCAGCCTAC ATGCCACCAC CTCCCTGCAC 
    TCCCCATGCA CCACCAACAC AAGCTTCAGG CAGAATCAGG TCATCTTCTT 
    CACCACCAGA AGCAACAGGA GGGGTAGCAC AAGGTACGGA GGAGCAAGAA 
    CCTTTCAGGT TTCATGCTCA GTCGACAAGC CAGTGGTGAT TGGCCTTGCA 
    GCAGACTCAG GATGCGGGAA GGGCACCTTT ATGCGCCGGC TCACCAGTGT 
    GTTTGGTGGT GCTGCAGAGC CACCCAAGGG TGGCAACCCA GACTCAAACA 
    CACTCATGAG TGACACGACA ACGGTGATAT GCCTCGATGA CTACCATTCC 
    TTGGACAGGA CTGGCAGGAA GGAGAAAGGT GTGACTGCCC TGGACCCTAG 
    GGCAAACGAT TTTGATCTCA TGTATGAGCA GGTGAAGGCA ATCAAAGAAG 
    GCAAGGCAAT TGAGAAGCCA ATCTACAACC ATGTTACTGG TCTCCTAGAC 
    CCACCGGAGC TTATCCAGCC CCCCAAGATT TTTGTCATTG AGGGCTTACA 
    TCCCATGTTT GATGAACGTG TGAGGGACCT CCTAGATTTC AGCATCTACC 
    TGGACATCAG TGACGAGGTT AAATTTGCAT GGAAAATTCA GAGGGATATG 
    GCAGAGCGCG GTCACAGCCT TGAAAGCATC AAGGCTAGTA TCGAAGCCAG 
    GAAACCAGAT TTTGATGCCT TCATTGATCC CCAGAAGCAA TATGCTGATG 
    CAGTGATTGA AGTTCTGCCA ACCCAGCTTA TTCCTGATGA CAATGAAGGA 
    AAGGTGCTAC GTGTTAAATT GATCATGAAA GAAGGTGTAA AGAACTTCAA 
    CCCAGTTTAC CTCTTCGACG AAGGATCAAG CATCACCTGG GTCCCTTGTG 
    GAAGAAAACT CACATGTTCT TATCCTGGCA TCAAATTTGC CTATGGCCCA 
    GACACTTACT TTGGCATGAG GTATCAGTGC TGGAGATGGA TGGCCAATTT 
    GACAGACTAG ATGAGCTTAT CTATGTTGAG AGCCATTTAA GCAACCTCTC 
    AACCAAATTT TATGGAGAGG TGACACAGCA AATGCTAAAG CATGCAGACT 
    TCCCCGGCAG CAACAATGGA ACAGGTCTCT TCCAAACTAT CGTAGGACTG 
    AAGATTAGAG ATCTCTATGA GCAGATTATT GCTGAGAGGG CCGGTGCACC 
    TACTGAAGCG GCAAAAGTTT AATGAGCTCC ACATTCATAT TTCGTGAATC 
    TCTTCATCAC CATACCATAT CAATGACAAT GGGCATCCTC GCATTTCTTG 
    TAACTAGTTT TGGAAATATT ACAGCTAGAA GAAAGTAGGA TGGTCATTGC 
    ATAACTTGTG AAACCATGCA ATGGAACTTC TAAAAATCCC TCTCCATGAG 
    GGTGCTCCTA CATCTCTTCT TGACACATTT CAATGTACAT CTTCTATATT 
    TCAATGTAGA AAGAAATACG GTTGCTTTCT ACTATAAAAA ATAGGTCCTT 
    CCTTT

    Gene models with high sequence identity

    1. AT1G32060.1 [+] show detail - phosphoribulokinase
      E-value: 0; Score: 153.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Phosphoribulokinase/uridine kinase 6.8e-79
    HMMPanther PHOSPHORIBULOSE KINASE 1.7e-160
    HMMPanther URIDINE KINASE RELATED 1.7e-160
    HMMPanther PHOSPHORIBULOSE KINASE 4.7e-30
    HMMPanther URIDINE KINASE RELATED 4.7e-30
    FPrintScan Phosphoribulokinase 2.6e-34
    FPrintScan Phosphoribulokinase 2.6e-34
    FPrintScan Phosphoribulokinase 2.6e-34
    FPrintScan Phosphoribulokinase 2.6e-34
    Gene3D no description 3.3e-46
    PatternScan Phosphoribulokinase 0
    superfamily P-loop containing nucleoside triphosphate hyd 7.5e-45

    See the detailed result >

    AT1G32060.1

    Model type
    Protein coding
    Short Description
    phosphoribulokinase
    Computational Description
    phosphoribulokinase (PRK); FUNCTIONS IN: protein binding, phosphoribulokinase activity, ATP binding; INVOLVED IN: response to cold, defense response to bacterium, biosynthetic process, peptidyl-cysteine S-nitrosylation; LOCATED IN: in 8 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribulokinase/uridine kinase (InterPro:IPR006083), Phosphoribulokinase (InterPro:IPR006082); BEST Arabidopsis thaliana protein match is: uridine kinase-like 5 (TAIR:AT3G27440.1); Has 6197 Blast hits to 6197 proteins in 2200 species: Archae - 37; Bacteria - 4118; Metazoa - 341; Fungi - 129; Plants - 1120; Viruses - 2; Other Eukaryotes - 450 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR