K24750

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24750

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24750

Determination of introduced cDNA(s)

  • J023059H15 - Rice Full-length cDNAs - Original: J023059H15

    full reading [+] show sequence

    Nucleotide sequence: J023059H15 - full reading
    GTTTCTCGGC CTCTCCTCCC CCGGCCGGCG CTTCTCATCT CCTCCTCCTC 
    TCTCCGGCGA CGGCAACAGC TCGGGACGGC GTGGCTCGAG GCGACGGAAA
    TGTCTCTGCG GGGCGGAGCG CAAGGACGAG CTCTCCGTGC AGGAACAAGC
    TCGACGGCGG TGGCCTTTAC TCCACCACCA TCCTCTCCCA ATTCGCCGGG
    GAGGCGATCT CCTCCCTCCC TCCCATCCGC CGGTGGGGTC CTCTCCTCCC
    ACGCGCCGGC GCGCCGCCCT CTTAGACGTC GTTTCCTCCT CCGTGTCGCT
    AGATGGGTCG AGGAGCTCGG CAGCGGCGTG CGGGGATTGG GTAACAGCTG
    GGCGTCGGTG ACAAACCCCT ACGATGCTGC TGCTTCTCCC CTCGCTGATC
    CGTCCGGTGT CACACCTCAC CGCCCGTCCG GACATACGTC GTCTCCCCTA
    TTTCAATATT GAAGCGCTCG ATCCGCCGGC GTAGCGGTCG ACCTGGACGG
    CCGCCACCCA AGCGCTGTCG CACCTTGCCG TCCTCCCCGT CCCGTGCCTT
    GCCGTCGCCA CATCCATTCC CCCATCGTCG TGCCTAATGG AGAGGAGGAG
    CTTGTCGTCG ACACCACCAG GTGCGTCGAC TAACAATTAC GGGCAACGCA
    AGCAAGAAAG ATGGCGGGGA TGCAAGATGC GACTAGCTGA AAACAAGGAC
    AACGAGAAGT AAGTATAGGT AATCAGGTTG CTGTGGAGGG AAAAGGCAGC
    AGTGATGGAG GTGATGAAGG AATCAGTACG GAGGAAGAGA GAATGTGTTC
    AGCACGTGCT CAATGCGAAA ACAGAGATGG CCAGTTGGGG AAACTAAAGT
    TTCATTTGCA AAGCATACTA AGGGCGAGTT CAGTATTAGA ATGTCTCATT
    CTTATTTCCA TCGCCGCTGC CTCTCATCTC CACCACCATT GCCACCTCCA
    CGCCTCTCCA CCAGCGCCCC ATCCTCCATC TAGACACGCT TCCTGAGTTC
    GAGTTCAAGT ACACCAGATA GTCAACTGAA GAGAATAAAC TACTGCAATC
    ACCTTTTTTC AGGAACATCA CTTTCATCAA AGTTATTCTC TCCTAGGCCC
    AATTCAGTTA GGCCTGACAA TTTGCCAACC CATATTGTAA ATGGTCCATA
    AAAAGCATTT GTTGATATAG TATTTTGAGC AAATGTTGAA AGATCAGGTA
    ATTTCCCTGA CAAACTGTTT GTTGACAAAT TAAGAACCTG CAGATTTGTG
    C

    Gene models with high sequence identity

    1. AT1G72180.1 [+] show detail - Leucine-rich receptor-like protein kinase family protein
      E-value: 0.00000002; Score: 57.40

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Leucine-rich repeat 0.0075
    HMMPanther LRR RECEPTOR-LIKE KINASE 0.000057
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 0.000057

    See the detailed result >

    AT1G72180.1

    Model type
    Protein coding
    Short Description
    Leucine-rich receptor-like protein kinase family protein
    Computational Description
    Leucine-rich receptor-like protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: HAESA-like 1 (TAIR:AT1G28440.1); Has 222922 Blast hits to 143384 proteins in 4612 species: Archae - 143; Bacteria - 22250; Metazoa - 69718; Fungi - 11673; Plants - 90830; Viruses - 408; Other Eukaryotes - 27900 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR