K24803

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24803

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24803

Determination of introduced cDNA(s)

  • J023063C24 - Rice Full-length cDNAs - Original: J023063C24

    full reading [+] show sequence

    Nucleotide sequence: J023063C24 - full reading
    GAGGTAGCTA GCTAGCCCGA AGTTATCATC AAACTGATAT CTCCTCATCC 
    GATCCTCTTC TTGCTTCACC TGCTGCCCTC TGCTCCGGTC GATCGCTTGC
    ATATTGCATA TTTGCATGCA GAGCTGCCAT GGGAATACCT TCTTTCTACA
    GGTGGCTCGT GAACAGATAC CCAAGCATCG TCTCCCCGGC AAAGGAGAGC
    CGCCCTGCAG ATGGCATCGT CGTCTACGAC AACCTCTACC TCGACATGAA
    TCAAATCATC CATTATTCCT TCCACCCGCA GGACCAGATG AACGCCGGCA
    CAGATGTGTG CGCTCCGACG ACGGTCAGCG AGGTTTTCGA GTCCATGTTC
    GACTACCTGG ACCGCTTGTT TCGCATCGTC AGGCCGAGAA GGCTCCTCTA
    CTTGGCAGTG GGTTCGTCGT AGATGTACAG CAGATGGATC GTTGGATCGA
    TTCTCTCGTC AAATTACTTA GTACCATATT GTCGTTTCAA GAATTAATCA
    TGGATTTGTT TTTGTTGGTT GGCTTGGCTT CAATTATTTC TGCAGTTTAT
    GTACTTCTTT TATTATTCTC TCTCACTGCA CGCTCTCTTT TTTTTAAAAA
    AAAATGGTTT AATTCCATGT GCAGATGGGG TTGCTCCGTG CGCCAAAATG
    AACGGAATGC GAAGAGGACG ACGTTTCGCC TGGGTAGCCA GAGTCAATCC
    TTTGCATTTA TTTATTTTCT TGCATGTCGA TCAGCTAGCT AGCTGCTGAA
    GCAATTGATC GGTCGAGAAA AAGGCATCCA TGCTTTGGTT CAATTTTACA
    GGCGAGTGAA GAGGAGGAAA TGCAGAAGAT ATCAGAAGGG GTCTCTGACC
    CCAATGTCAT CACGCCAGGG ACTGAATTCA TGGAGAAGAT ATCGCAAGCG
    CTCACGTACT ACATCCGTGC CAGATTGAAT AGCAGTGATC CAGGGTGGAA
    ACACATCATG GTTAATTAAT TTTCTCTTGC ACTTCTTCAG TATAAATGTA
    CCTCGTATTC TTTCTTAATT TCCCGTTTTT TTTATCCAAG GAGAGTCCAT
    GCATGTTC

    Gene models with high sequence identity

    1. AT1G75660.1 [+] show detail - 5'-3' exoribonuclease 3
      E-value: 9e-23; Score: 104.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Putative 5-3 exonuclease 0.000000000041
    HMMPfam Putative 5-3 exonuclease 6.7e-25
    HMMPanther 5'->3' EXORIBONUCLEASE 2.7e-24
    HMMPanther 5'->3' EXORIBONUCLEASE 0.000000000052

    See the detailed result >

    AT1G75660.1

    Model type
    Protein coding
    Short Description
    5'-3' exoribonuclease 3
    Curator Summary
    Encodes a protein with similarity to yeast 5'-3'exonucleases and can functionally complement the yeast mutations. In Arabidopsis XRN3 acts as a suppressor of posttranscriptional gene silencing. Mutants accumulate excised miRNA products suggesting that XRN3 is involved in degradation of these products.
    Computational Description
    5'-3' exoribonuclease 3 (XRN3); CONTAINS InterPro DOMAIN/s: 5'-3' exoribonuclease 2 (InterPro:IPR017151), Zinc finger, CCHC-type (InterPro:IPR001878), Putative 5-3 exonuclease (InterPro:IPR004859); BEST Arabidopsis thaliana protein match is: exoribonuclease 2 (TAIR:AT5G42540.1); Has 4264 Blast hits to 3505 proteins in 442 species: Archae - 2; Bacteria - 295; Metazoa - 1361; Fungi - 725; Plants - 751; Viruses - 31; Other Eukaryotes - 1099 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR