K24810

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24810

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24810

Determination of introduced cDNA(s)

  • J013039I19 - Rice Full-length cDNAs - Original: J013039I19

    full reading [+] show sequence

    Nucleotide sequence: J013039I19 - full reading 
    GGTTCGATTC ATTCGTCACG GCACAAGAAA CCATTCTTAA TCACTCGCCC 
    TTTCTTCCTC CATCAGTCCA TCTCACTTTG GTTCCTTCAA GAAACGAAGC 
    ATCAAGAAAG AGGAGAGGAG AGGAAAAGCA AGTGAGGTTT CAGACTTCAG 
    AGGTGCTCTG GAGGAGTTTG GTCTCGATCA TCATCTCTCT GAAGCCTGAG 
    AGAGTTTCAG CTCCGATTAC CACTTGACCA TGGCGAGCAA ATACAGAGGC 
    TACTACCACG ACGAGGCATC GTCGGCCGCC GGCGGCGGCG GCGGCGGCGG 
    CGGCGGCGAC GGGTACAGGA GGGAGAAGCA GGTGAGGAAG AAGCGGCTGA 
    CGGCGCAGAA GAGGAAGGAG ATCAAGGAGG CGTTCGACCT CTTCGACACC 
    GATGGATCAG GTACCATTGA TCCAAAGGAG CTCAACGTCG CCATGAGAGC 
    ACTGGGGTTT GAGATGACAC CAGAGCAAAT ACACCAGATG ATCGCGGAGG 
    TGGACAAGGA CGGGAGCGGG ACGATCGACT TCGACGAGTT CGTGCACATG 
    ATGACCGACA AGATGGGCGA GCGCGACGCC AGGGAGGAGC TCAACAAGGC 
    CTTCAAGATC ATCGACAAGG ACAACAACGG GAAGATCTCG GACGTGGACA 
    TCCAGCGGCT GGCCATCGAG ACCGGCGAGC CCTTCACGCT GGACGAGGTC 
    AGGGAGATGA TCGAAGCCGC CGACGAGAAC GGTGATGGCG AGGTCGACCA 
    CGAGGAGTTT CTCAAGATGA TGAAGAGGAT AGGATTTGGG GCCGGGTTTT 
    TTTAGCTCAG CAAGCAGCTA ATTAATCACT AGTGCTTCAG TAAACACAAA 
    ATAATGTTTG GGGAGGTTTA GGCATGATGT ACCGACTGGA TGGCATACTA 
    TCACTATGTA CATATGTAGG TTAAGTTGGT ACCATACCGC CTTATGTTTT 
    GCAACTGGTG TTTTGGTGAC TGAGACGATG TACATAATTG TACAGCAGTA 
    CAGATACCAA GGTAGATCAA ATAAACACGA GATTGTTATT ACTCGAAGAA 
    AACATTGGTT TG

    Gene models with high sequence identity

    1. AT3G50360.1 [+] show detail - centrin2
      E-value: 4e-57; Score: 218.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan EF-HAND 2 16.717
    ProfileScan EF-HAND 2 14.96
    ProfileScan EF-HAND 2 11.668
    ProfileScan EF-HAND 2 14.458
    FPrintScan Flagellar calcium-binding protein (calflagin) 0.000091
    FPrintScan Flagellar calcium-binding protein (calflagin) 0.000091
    HMMSmart Calcium-binding EF-hand 0.000000015
    HMMSmart Calcium-binding EF-hand 0.000000016
    HMMSmart Calcium-binding EF-hand 0.097
    HMMSmart Calcium-binding EF-hand 0.00000017
    HMMPanther CENTRIN-RELATED 4.7e-79
    HMMPanther CALMODULIN 4.7e-79
    HMMPfam EF-hand 0.000000008
    HMMPfam EF-hand 0.00000000077
    HMMPfam EF-hand 0.000000066
    PatternScan EF-Hand 1, calcium-binding site 0
    PatternScan EF-Hand 1, calcium-binding site 0
    PatternScan EF-Hand 1, calcium-binding site 0
    PatternScan EF-Hand 1, calcium-binding site 0
    Gene3D EF-hand-like domain 5.2e-41
    superfamily EF-hand 2e-47

    See the detailed result >

    AT3G50360.1

    Model type
    Protein coding
    Short Description
    centrin2
    Computational Description
    centrin2 (CEN2); FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: centrin 2 (TAIR:AT4G37010.2); Has 32825 Blast hits to 20606 proteins in 1695 species: Archae - 1; Bacteria - 190; Metazoa - 13563; Fungi - 7187; Plants - 7027; Viruses - 2; Other Eukaryotes - 4855 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR