K24814

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24814

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24814

Determination of introduced cDNA(s)

  • J033121G11 - Rice Full-length cDNAs - Original: J033121G11

    full reading [+] show sequence

    Nucleotide sequence: J033121G11 - full reading 
    GGGCGCAACC TCTCTCGACG TGCTAATGGC GGCGGCGGCG GCGGACTTCG 
    CGGCGAGCAA GCGGGCCATG GCCTACGCGC TCTGCAAGCA CCTCAGCCTC 
    GATCCGAATA CAATATCCAG TACAAGTATT GAAGAGAGTG ATATTGCCAC 
    CCTGTTCTCA CATATTGTGA AATCGAGTGA AGATGAGGTA CTGAAATGGG 
    TTGAATTTTC CAGCAATTTT GTTGGAAAAT GTGGAGAACA GCATGCATTG 
    CTTGGTAATC TGAATCAAGA CTTGTCCCAG AAATCAGTTC TGTTGGGTAA 
    TGGTTTTAAA CCATCAGTTG CTGATATTGT TGTGTTTGCA ACCATACAAG 
    TTTTTGTGAG TCATCTTGGT GAAAACGAGT TGCAGAAATA TCCACATGTA 
    TTGCGGTGGA TGGACTATAT CCAGAACATC GTTGATTTTG GCACAACAGT 
    ACAAAAGGTT AACTTGACCA AATCTGTCTT CGATCCACCT TCTCATCCAA 
    AGAAGGCAGA TAAAGGTGAC ACTGATCCAA GTTCAAAGAA AGTTGTTTCA 
    GGACAGAAGA ATGTGGGCAA ATCGGATGCA AATGTTGATT CCAAGAAAGC 
    TGCACCAGAG AATAAAGCTC CTGAGAATAA GGCAAATCCT ACTCCAGCAA 
    AAAATAACAA ACCTTCTGGG GATAAAAAGA AAGCCCAGGA GAAATCTGCA 
    GGAAAACCAA ATGAGGGAGT TGCGGATAAA GCTCCACAGA AAACTGCAGA 
    AAAGGACTCA GAATGCAATG TCAGTATCCT GAATATACAG GTTGGCCTTA 
    TTCGCAAAGC ATGGAAGCAC CCATCTGCTG ACAGCCTCTT GGTTGAGGAG 
    ATAGATTTGG GAGATGGCAA TGTGCATCAA GTTGTTAGTG GGCTTGCCAA 
    GTTCTTCAGC CCAGAGGAAC TTGTTAATCG GCATGTTGTA TTAATCACGA 
    ATGTGAAGCC TGGGAAGCTG CGAGACGTAA TGTCTGCCGG ATTGGTCTTG 
    TGTGCTTCAA ATCAAGATCA TACAGTTGTA GAGCCATTGA TTCCTCCAGA 
    AGGAGCTAAG CCTGGAGAGC GTATTTCATT TGCAGGGTTT GATGGGAAGC 
    CAGAAGATGT TCTTAATCCG AAGAAGAAAC AGCTCGACAA GATCACACCG 
    GATCTTCACA CTGATGGAAA TGGAATTGCA ACATACCGAG GGGTACCCTT 
    CACTACATCT GCTGGTCCAT GTAGATCTTC TGTTCCTAAT GCGAGCATTA 
    AGTGAGCAGT TATTTTAACA GATTCCAAAC ATTGTTGTGC TATAACACAT 
    GCTAGGTGGA TGTACTATTT CATCTTGCAT CTTATTACAT GCCCTATCAA 
    CTGTTGTCAG CGTAGCGTCC ATCTACTGTG ATATCTAATA GAAAATTTTG 
    ACTAGCCAAT GTGAAGAACA TTTGTATTAC CTTGCACCAA ATGCAAAATC 
    CTTCATGAAC ACGGTTGTTT TCAGGCAGGA TTTCTGATGA GTC

    Gene models with high sequence identity

    1. AT2G40660.1 [+] show detail - Nucleic acid-binding, OB-fold-like protein
      E-value: 1e-105; Score: 380.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    superfamily Nucleic acid-binding, OB-fold-like 3.6e-46
    superfamily Glutathione S-transferase, C-terminal-like 2.3e-07
    HMMPanther ENDOTHELIAL-MONOCYTE ACTIVATING POLYPEPTIDE I 4.4e-21
    HMMPanther ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHION 4.4e-21
    ProfileScan Glutathione S-transferase/chloride channel, C-terminal 10.498
    ProfileScan tRNA-binding domain 28.747
    Gene3D Nucleic acid-binding, OB-fold 4.9e-46
    HMMPfam tRNA-binding domain 7.1e-26

    See the detailed result >

    AT2G40660.1

    Model type
    Protein coding
    Short Description
    Nucleic acid-binding, OB-fold-like protein
    Computational Description
    Nucleic acid-binding, OB-fold-like protein; FUNCTIONS IN: tRNA binding; INVOLVED IN: tRNA aminoacylation for protein translation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), tRNA-binding domain (InterPro:IPR002547); BEST Arabidopsis thaliana protein match is: methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (TAIR:AT4G13780.1); Has 6072 Blast hits to 6060 proteins in 2115 species: Archae - 244; Bacteria - 4267; Metazoa - 483; Fungi - 217; Plants - 163; Viruses - 1; Other Eukaryotes - 697 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR