K24829

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24829

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
T2  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24829

Determination of introduced cDNA(s)

  • J033048B22 - Rice Full-length cDNAs - Original: J033048B22

    full reading [+] show sequence

    Nucleotide sequence: J033048B22 - full reading
    GGAACCCCCT CTCTCCCATC GCCGCCGCCG CCGCCGCCGA CACAGCCGCT 
    GACCTCGCCG CCGCCGACGC CGATGGAGAT GGCCGCCCCC GTCTCCCCCG
    CGCCGCGCAC CGTCGAGGAC ATCTTCAAGG ACTTCTCCGG CCGCCGCGCC
    GGCCTCGTCC GCGCCCTCAC CGTCGATGTG GATGAGTTCT ACGGATTCTG
    CGACCCAGAG AAGGAGAATT TGTGCCTGTA CGGGCACCGG AACGGGCGGT
    GGGAGGTGGC GCTGCCGGCG GAGGAGGTGC CGCCGGAGCT GCCGGAGCCG
    GCGCTCGGGA TCAACTTCGC CAGGGACGGG ATGCACCGCC GCGACTGGCT
    CTCGCTCGTC GCCGTCCACT CCGACTCGTG GCTGCTCTCC GTCGCCTTCT
    TCTTCGGCGC GCGCCTCAAC GGCAACGAGA GGAAGCGCTT ATTCAGCTTG
    ATCAATGACC ATCCAACCGT GCTTGAAGCA CTGTCTGATA GGAAGCATGG
    AAGGGATAAT AAATCTGGTG CCGACAATGG CAGCAAATCC AGGCACTCAG
    GAAAGCGAGC AAATGACGTG CAGACAAAAA CCTCGAGGCC AGCAGTTGTT
    GACGATGGGT ACGATGAAGA AGAACACAGT GAAACCCTAT GTGGAACCTG
    CGGTGGCCGC TACAACGCCA ACGAGTTTTG GATTGGGTGC GACATTTGCG
    AGCGGTGGTT CCACGGCAAA TGCGTTAGGA TAACACCAGC GAAAGCGGAA
    CACATAAAGC ACTACAAGTG CCCTGATTGC AGCAGCTCCA AGAAGAGTAG
    GCAATAAAAA CCATGGAGCT GCTGCTGTGG CTCTCTACTG CTGACTAAGC
    TGATCAATCA AATGATACTT GCCATCCCTC TTCCAGTCCC AAGTTGGCGG
    CAGATGTGAA GAATTTGCTC TAGAACATTG CGCACTGTTG TGGTAGATGC
    TGGAAAACAA AAAAGAAGAA ACTTTACAGG ATAGTTTGTT TCATAAACTG
    GTCGGTTACT GTTGTGGTTG TTCATTTGAG ATATGGATAC TGTTACATTG
    TAGCCTTTAG AGGAAATTTG TTCATGCCTT GTTTCTAATT TGGTATGTCC
    TTCCCTTGCT GCATGACATT GATTTCTCTC TACAAGTTTC TGTCTGTCAC
    TGTGC

    Gene models with high sequence identity

    1. AT3G11200.1 [+] show detail - alfin-like 2
      E-value: 2e-87; Score: 319.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PHD/F-BOX CONTAINING PROTEIN 0.000000000016
    HMMSmart Zinc finger, PHD-type 0.0000000021
    PatternScan Zinc finger, PHD-type, conserved site 0
    superfamily Zinc finger, FYVE/PHD-type 0.0000000000023
    HMMPfam Protein of unknown function DUF3594 2.9e-70
    HMMPfam Zinc finger, PHD-finger 0.00000000033
    Gene3D no description 6e-16
    ProfileScan Zinc finger, PHD-finger 9.25

    See the detailed result >

    AT3G11200.1

    Model type
    Protein coding
    Short Description
    alfin-like 2
    Curator Summary
    AL2 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.
    Computational Description
    alfin-like 2 (AL2); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Protein of unknown function DUF3594 (InterPro:IPR021998), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: alfin-like 1 (TAIR:AT5G05610.2); Has 1527 Blast hits to 1482 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 758; Fungi - 235; Plants - 458; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR