K24835

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24835

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24835

Determination of introduced cDNA(s)

  • J033123O09 - Rice Full-length cDNAs - Original: J033123O09

    full reading [+] show sequence

    Nucleotide sequence: J033123O09 - full reading 
    GACAGCCCGC GCCCGCCTTC TCCCCTATCT ATCATTCTAT CCCGCCCGCT 
    TCCTTCTCCC CCGCGGCCGG ACTGCAACTG TAACCCAATT CCTCCTCCCT 
    CCTCGATCAC CATGGAGGGA GTTGGCGGCG GCGGCGGCGG TGAGGAGTGG 
    CTGCGGCCGA TGGACGCGGA GCAGCTGCGG GAGTGCGGGC ACCGGATGGT 
    GGATTTCGTC GCCGACTACT ACAAATCCAT CGAGGCCTTC CCCGTCCTCA 
    GCCAAGTCCA GCCAGGATAT CTGAAGGAAG TTCTTCCAGA TTCAGCCCCA 
    AGACAACCTG ATACTTTGGA TTCCCTTTTT GATGATATTC AACAAAAAAT 
    AATACCAGGA GTAACGCACT GGCAAAGTCC AAATTATTTT GCTTACTATC 
    CTTCAAATAG CAGCACTGCT GGATTCCTGG GGGAGATGCT TAGTGCTGCC 
    TTTAACATTG TTGGCTTCAG TTGGATAACC TCTCCTGCTG CTACTGAGCT 
    AGAGGTTATA GTCTTAGACT GGTTTGCAAA AATGCTCCAG CTTCCAAGCC 
    AGTTTCTGTC AACTGCTCTT GGTGGAGGAG TAATACAAGG TACTGCCAGT 
    GAAGCTGTTC TTGTTGCACT ATTGGCTGCA CGAGATAGAG CTTTAAAGAA 
    GCATGGGAAG CATTCCCTTG AAAAGTTAGT AGTTTATGCA TCTGACCAGA 
    CACATTCTGC TCTACAAAAG GCATGCCAGA TTGCAGGAAT TTTCTCAGAG 
    AATGTTAGGG TTGTAATTGC TGATTGTAAT AAGAACTACG CCGTTGCCCC 
    TGAGGCAGTT AGTGAGGCGC TTTCCATAGA CCTGTCATCT GGTTTGATAC 
    CATTTTTCAT CTGTGCAACA GTAGGTACAA CATCATCGTC AGCTGTGGAC 
    CCCCTGCCTG AACTAGGACA GATAGCAAAG TCCAATGACA TGTGGTTCCA 
    TATTGATGCC GCATATGCTG GAAGTGCTTG TATATGCCCA GAGTACCGAC 
    ACCACCTCAA TGGAGTGGAA GAAGCTGATT CGTTTAATAT GAATGCCCAC 
    AAATGGTTCC TCACTAACTT CGATTGTTCC TTGCTATGGG TTAAGGACAG 
    GAGTTTTCTC ATACAATCAT TGTCTACGAA TCCAGAGTTT CTCAAAAACA 
    AGGCTTCCCA AGCTAATTCA GTTGTTGATT TCAAAGATTG GCAAATTCCA 
    CTTGGACGAC GCTTTAGATC ACTTAAGCTA TGGATGGTCT TGAGACTTTA 
    TGGTGTGGAC AACCTACAAA GCTATATCCG GAAACACATA CATTTGGCTG 
    AACATTTTGA GCAACTTTTA TTATCTGATT CAAGATTTGA GGTAGTGACT 
    CCAAGGACTT TTTCACTTGT TTGTTTCCGA CTTGTGCCTC CCACTTCTGA 
    CCATGAAAAT GGACGTAAAT TGAATTACGA TATGATGGAT GGTGTAAATT 
    CAAGTGGAAA GATCTTCCTA TCTCACACGG TTCTTTCAGG TAAGTTCGTC 
    TTGAGATTTG CAGTAGGAGC GCCACTTACA GAGGAGCGAC ACGTGGATGC 
    CGCTTGGAAG CTTCTACGAG ATGAGGCCAC CAAGGTCTTG GGGAAAATGG 
    TGTAGATAAG TGAATACCGC TCACTGATTC AGCTCATTGT TTGCCCTTCG 
    AGTATTGAAG GTGCCAAAGT TCATACAAAA AGTTTCTGTT AAGGACAATA 
    CACGATAGCA TAATTTATTC AGTTGTGAAA CAGAAATACT GAATACTTTC 
    TATGATTCTT TTAGTGGGTT AGGTCGTTTG ATCGACCTGC AATTTTTTTC 
    G

    Gene models with high sequence identity

    1. AT2G20340.1 [+] show detail - Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
      E-value: 0; Score: 697.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Pyridoxal-phosphate binding site 0
    HMMPfam Pyridoxal phosphate-dependent decarboxylase 2.2e-146
    Gene3D no description 5.9e-31
    Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 1 4.6e-97
    Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 2 3.6e-30
    superfamily Pyridoxal phosphate-dependent transferase, major domain 5.4e-151
    FPrintScan Aromatic-L-amino-acid decarboxylase 7.2e-80
    FPrintScan Aromatic-L-amino-acid decarboxylase 7.2e-80
    FPrintScan Aromatic-L-amino-acid decarboxylase 7.2e-80
    FPrintScan Aromatic-L-amino-acid decarboxylase 7.2e-80
    FPrintScan Aromatic-L-amino-acid decarboxylase 7.2e-80
    FPrintScan Aromatic-L-amino-acid decarboxylase 7.2e-80
    FPrintScan Aromatic-L-amino-acid decarboxylase 7.2e-80
    FPrintScan Aromatic-L-amino-acid decarboxylase 7.2e-80
    FPrintScan Aromatic-L-amino-acid decarboxylase 7.2e-80
    HMMPanther AROMATIC AMINO ACID DECARBOXYLASE 2.3e-121
    HMMPanther Pyridoxal phosphate-dependent decarboxylase 2.3e-121

    See the detailed result >

    AT2G20340.1

    Model type
    Protein coding
    Short Description
    Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
    Computational Description
    Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; FUNCTIONS IN: pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity, tyrosine decarboxylase activity; INVOLVED IN: response to wounding, cellular amino acid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aromatic-L-amino-acid decarboxylase (InterPro:IPR010977), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Pyridoxal-phosphate binding site (InterPro:IPR021115), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: L-tyrosine decarboxylase (TAIR:AT4G28680.1); Has 5452 Blast hits to 5431 proteins in 1792 species: Archae - 99; Bacteria - 1888; Metazoa - 2300; Fungi - 264; Plants - 262; Viruses - 5; Other Eukaryotes - 634 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR