K24841

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24841

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • hyponastic (PATO:0002329)
    (Cauline leaf::Shape::hyponastic)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
rosette leaf (PO:0000014)
  • upturned (PATO:0002031)
    (Rosette leaf::Shape::hyponastic)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24841

Determination of introduced cDNA(s)

  • J033057B20 - Rice Full-length cDNAs - Original: J033057B20

    full reading [+] show sequence

    Nucleotide sequence: J033057B20 - full reading 
    GGGGGAGGCA TCCCATTCGC ATCACTATCT TCCCAATCTC GCGAATAATC 
    GAGAGAGAGA GAGAGAGAGA GAGAGAGAGG CGACGAGACG GCGATTGCTC 
    GGTTCTCCCG CGGGCGGCGG CGAGCCGGCG AGGGCTTCTC CGGTGGGGGG 
    CGGCGAGCTA TCCTAGCGCC CGCCTTGGGA GCGCTCTCGC GGATCTCCTT 
    TGGAGCTTTG ATAGCATAGC AAGGTCATGG CAGAGGTTGC AGATTTAACT 
    GGGGATGGAG GTGTTCTTAA GACGGTGGTC AGAAAAGCAA AGGATGATGC 
    TATAGCTCCA ACTGATAGTC TTCCCTTGGT TGATGTTCAT TATGAAGGCA 
    CACTCGCTGA AAATGGTGAA GTTTTCGACA CCACTCATGA AGACAACTCT 
    ATTTTCTCAT TTGAAATTGG GCAAGGAGCT GTCATTAAAG CATGGGATAT 
    AGCTTTAAGA ACTATGAAGG TTGGTGAAGT TGCAAAAATA ACATGCAAGC 
    CAGAATACGC ATACGGAAGT GCAGGGTCGC CGCCAGAGAT TCCACCCAAT 
    GCAACACTCA TTTTTGAGGT GGAGTTAGTG GCTTGTAGGC CTAGGAAAGG 
    TTCAAGCCTG GGCGGTGTTT CTGATGAGAA AGCCAGGCTA GAGGAACTAA 
    AGAAGCAGCG AGAGCTAGCT GCTGCCACCA AGGAGGAAGA GAAAAAGAAG 
    AGGGAAGAAG CGAAGGCTGC TGCAGCAGCT CGTGTCCAAG CCAAACTTGA 
    CGCGAAGAAG GGGAAGGGAA AAGGAAAGGG AAAATAGATG ACTAGTATTT 
    GCTTCTGACT ACTGTAACCT AGAAATAATC CACAACAAAT CATCATCTGC 
    AAGATTGCTT GTTGGCTACT GTTCATCAGA TGCTGCGTTG TTGCTCCTGT 
    TTGACACCAT GGCTGTACTG ATAGAACAAA ATTGTAGTTA ACGTTTTCAC 
    AAATCATCAC ATGCAATCAT TGACCGGTTA TTGGTTAATG ATTGCATCTT 
    CATATCTGAT G

    Gene models with high sequence identity

    1. AT3G55520.1 [+] show detail - FKBP-like peptidyl-prolyl cis-trans isomerase family protein
      E-value: 9e-62; Score: 234.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Peptidyl-prolyl cis-trans isomerase, FKBP-type 27.71
    HMMPfam Peptidyl-prolyl cis-trans isomerase, FKBP-type 4.3e-28
    superfamily FKBP-like 5e-34
    HMMPanther FK506 BINDING PROTEIN 4 1.2e-47
    HMMPanther Peptidyl-prolyl cis-trans isomerase, FKBP-type 1.2e-47
    Gene3D no description 9.5e-32
    Coil coiled-coil 0

    See the detailed result >

    AT3G55520.1

    Model type
    Protein coding
    Short Description
    FKBP-like peptidyl-prolyl cis-trans isomerase family protein
    Computational Description
    FKBP-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: chloroplast thylakoid lumen; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: FKBP-type peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT5G48570.1); Has 8353 Blast hits to 7666 proteins in 1517 species: Archae - 10; Bacteria - 3980; Metazoa - 1950; Fungi - 483; Plants - 752; Viruses - 0; Other Eukaryotes - 1178 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR