K24850

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24850

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • dark green (PATO:0001249)
    (Stem::Color::dark)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24850

Determination of introduced cDNA(s)

  • J033133B12 - Rice Full-length cDNAs - Original: J033133B12

    full reading [+] show sequence

    Nucleotide sequence: J033133B12 - full reading 
    GGGACTGCAC CTCGCAGTCC GGCATGGCTG GACAGATGCT ACCGCCGATT 
    GCGCTTGTTG CTGTGGCCAT CTGTATCACC GCGGCGGCGG CGGCGAAGGT 
    GCCGGCGATA TACGTGTTCG GCGACTCCAC GGCCGATGTC GGCAACAACA 
    ACTACCTGAC CGGCGCCGCC GTGCCGCGGG CAAACTTCCC GCACAACGGC 
    ATTGACTTCC CCACGTCGCG GCCCACCGGC CGGTTCAGCA ACGGGTACAA 
    CGGCGTCGAC TTCTTGGCTC TTAACATGGG ATTCAGGCGC AGCCCCCCAC 
    CGTTCCTCGC CGTGGCTAAC AAAACCAGCA ACCCATTGTT CAGGGGGCTC 
    CAGGGAACAA ACTTTGCCTC TGCAGGATCA GGCATTCTCG ACTCAACAGG 
    TCAATCCATC ATCCCAATGA GCAAGCAAGT GCAGCAATTC GCCGCCGTGC 
    AACGCAACAT CTCAGCACGC ATCAGCCAGC AAGCCGCTGA CACCGTGCTG 
    TCGAGATCCC TGTTCCTGAT CAGCACCGGC GGCAACGACA TCTTCGCCTT 
    CTTCTCCGCG AACAGCACGC CGTCGTCCGC GGAGATGCAG CGGTTCGTCA 
    CCAATCTCGT ATCGCTCTAC ACAAATCATG TCAAGGATCT GTACGTTCTC 
    GGGGCGAGGA AGTTCGCCGT GATCGACGTC CCGCCGATCG GGTGCTGCCC 
    CTACCCGAGA AGCCTGCAAC CGCTGGGCGC TTGCATCGAC GTCCTCAACG 
    AGCTGGCCCG TGGGTTGAAC AAGGGAGTCA AGGACGCCAT GCACGGCCTC 
    AGCGTGAGCT TCAGCGGCTT CAAGTACTCC ATCGGGAGCT CCCATGCCGT 
    GGTGCAAAGC ATCATGAAGC ATCCCCAACG ACTCGGATTC AAGGAGGTCA 
    CGACGGCTTG CTGCGGCTCC GGCAAGTTCA ACGGCGAGTC CGGGTGCACG 
    CCGAACGCCA CGCTGTGCGA CAACCGGCAC GACTACCTCT TCTGGGACCT 
    GCTGCACCCG ACGCACGCCA CGTCCAAGAT CGCCGCCGCG GCCATATACA 
    ACGGCTCGGT CCGCTTCGCT GCGCCGATAA ATTTCAGGCA GCTGGTGGAT 
    GACCAGCACT AGCTAGAGCG TGGCAGTGTC ACCGTGTAAC GTAGTACTAC 
    TAATTGTTGT ACGTCGCCGA CTATGTGTCT GTTTGTCTGG TGATATTGGT 
    GCGTAGGATA TGCTGGGCTG TGTTCATCAG TGGCTTGTGC TTTAGGCGGT 
    GGTGTAGTTT GGATACACAT ACCAAAATGT CATCTCCGTT ATTATTGTTG 
    CCCTTGTTGG CG

    Gene models with high sequence identity

    1. AT5G55050.1 [+] show detail - GDSL-like Lipase/Acylhydrolase superfamily protein
      E-value: 1e-52; Score: 204.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Lipase, GDSL 2e-20
    HMMPanther LATERAL SIGNALING TARGET PROTEIN 2 9.5e-14
    HMMPanther ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 9.5e-14

    See the detailed result >

    AT5G55050.1

    Model type
    Protein coding
    Short Description
    GDSL-like Lipase/Acylhydrolase superfamily protein
    Computational Description
    GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT3G50400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR