K24908

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	fruit (PO:0009001)	decreased length (PATO:0000574) (Silique::Shape::short)
	seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997) (Seed::Number::few)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Shape::zigzag) present in greater numbers in organism (PATO:0000470) (Stem::Number::many) abnormal (PATO:0000460) (Stem::Others)
	stem internode (PO:0020142)	decreased length (PATO:0000574) (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24908

Determination of introduced cDNA(s)

J013027I07 - Rice Full-length cDNAs - Original: J013027I07

full reading [+] show sequence

GAGAATTTGC CCTCCTCACT TCTATACTTC AATCCCCTTC CTTTATTTTT 
TTTTTTTGGG AGGGGCCGAG GCAACCGTCG CCACTCCGAC GATCCCGTCC 
CATCCGCCGC CGCCGCCGGA GATTTCCTCG AGATAAGCCA TGGGTCAAGC 
ACTCGGTTTG GTACAAGTAG ATCAATCGAC AGTAGCCATC AAGGAGTCCT 
TTGGGAAGTT TGATGAGGTT CTTGAGCCTG GATGCCACTT TTTACCCTGG 
TGCATAGGGA AGCAGATCGC TGGATATCTT TCCTTGCGTG TGCAGCAGCT 
GGATGTCCGT TGTGAAACAA AGACTAAGGA CAATGTTTTT GTCAATGTTG 
TGGCATCTGT GCAATACCGT GCTCTTGCTG AGAAGGCATC AGACGCCTTT 
TACAGGCTTA GCAACACCAG GGAGCAAATC CAGTCGTATG TTTTTGATGT 
GATCAGGGCT AGTGTTCCAA AGATGAACTT GGATGATGCA TTTGAGCAGA 
AGAATGAGAT CGCAAAAGCT GTGGAAGATG AGCTTGAAAA GGCAATGTCA 
ATGTATGGTT ATGAGATTGT GCAAACTCTT ATTGTTGATA TTGAACCAGA 
TGAGCATGTT AAGAGAGCAA TGAATGAAAT CAACGCAGCT GCTAGGCTGA 
GGGTGGCAGC CAATGAGAAA GCTGAAGCAG AGAAGATTCT TCAGATCAAG 
AGAGCTGAAG GAGATGCAGA ATCCAAGTAC TTGGCTGGTC TGGGTATCGC 
AAGGCAGCGT CAGGCTATAG TGGATGGGCT GAGAGACAGT GTTCTTGCCT 
TCTCCGAGAA CGTGCCTGGG ACCTCTGCCA AGGATGTCAT GGATATGGTT 
CTGGTTACGC AATACTTCGA CACCATGAAG GAGATAGGAG CCTCATCCAA 
GTCCTCTTCA GTGTTCATCC CTCACGGGCC AGGTGCCGTC AAAGATATCG 
CTGCGCAGAT AAGAGATGGT CAGCTCCAGG CCAAATTGAT CTAAGAGGAT 
GGCAGGGAAT GGATGTTCTG GATTTCTTGG GCATTACGAA AGTCTGCAGT 
AATACCTTAT CTACGTATTC GATATTTTGT GAGATAAAAA CTTAGGCAAA 
AGAAGTTCTA TTGTAAGTAT CACATGCACG CGTGCTTCAG TACCGTTTGT 
TCATAGTAAT TCCTGAGGTT ATTTCCCTAG ACGAGTGTCA ATATACTTCT 
TGAATTGCAT GTTTCTGTAA ATAATTCCTA AGTGTTACCG GGCTGTTTGG 
AATTATTTGC ATGTTGATGT TAGTGACCTT AAGTAATGTC CCATCTTATT 
ATGTGATGTC ATGATGATTT CC

Gene models with high sequence identity

AT5G62740.1 [+] show detail - SPFH/Band 7/PHB domain-containing membrane-associated protein family
E-value: 2e-137; Score: 486.00

InterPro Scan Digest

Program	Description	E-value
HMMSmart	Band 7 protein	1.2e-34
HMMPfam	Band 7 protein	3.1e-34
Coil	coiled-coil	0
HMMPanther	STOMATIN-RELATED	4.4e-95

See the detailed result >

AT5G62740.1

Model type: Protein coding
Short Description: SPFH/Band 7/PHB domain-containing membrane-associated protein family
Computational Description: HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1 (HIR1); INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: SPFH/Band 7/PHB domain-containing membrane-associated protein family (TAIR:AT1G69840.7); Has 5648 Blast hits to 5647 proteins in 1784 species: Archae - 171; Bacteria - 3783; Metazoa - 267; Fungi - 306; Plants - 270; Viruses - 3; Other Eukaryotes - 848 (source: NCBI BLink).
Link: InterPro Scan - TAIR