K24919

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24919

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24919

Determination of introduced cDNA(s)

  • J033105E18 - Rice Full-length cDNAs - Original: J033105E18

    full reading [+] show sequence

    Nucleotide sequence: J033105E18 - full reading 
    GGCAAGCAAG TCCTTCTGCT AGCTGCGAGC CTCACGTGCC CATTCACTCT 
    CTTTATTTAT TGCTGATTCC CGATCGATCG ATCGATCGAT CGATCAGCAG 
    GCAATAGTTA ATCGATCTCA ACAACTACCC ATCAGTTATT CAATACAATA 
    CAGCCATTCA GACAGAAGCA AGGTCTATCG AGTCAGAGAG ATCGACATCT 
    CGGCGAGCGA GATCGGTGAA TTGATGGGTG ATCATGGACG CCGGCGGCAG 
    GCGGCGGCGC CGCTGCTGGA GAAGAAGGGC AGCACCGGCA CCGGCGTGGA 
    CGATGGGTAC TGCATTGAGG GGTGCCCCGG GTGCGTCGTC GACCGGCGGA 
    AGGCCGCGAG CTACGGCATC CCCTACGGGA GCTTCCTCTT TGTCTGGATT 
    GTCACGCTCT GCACAGCTTT ACCAATATCA TCATTGTTCC CCTTCTTGTA 
    CTTCATGATA AGAGACTTGC ATGTTGCAAA AAGGACAGAA GATATTGGGT 
    TCTATGCCGG CTTTGTGGGT GCTTCGTTTA TGTTCGGTCG ATGTTTGACT 
    TCAACTGTTT GGGGAATAGC AGCAGATCGT ATTGGGAGGA AACCAGTTGT 
    TGTGTTTGGC ATTTTTGCGG TGGTCATATT TAATACGCTA TTTGGGCTTA 
    GTTTCACCTA TTGGATGGCA ATAGCTACAA GATTCCTTCT TGGTGCTTTA 
    AATGGTTTAC TTGGGCCAAT AAAGGCCTAT GCAATTGAAG TTTGCCGACC 
    TGAACATGAA GCTCTTGCAT AGTCACTTGT TAGCACAGCA TGGGGAATAG 
    GTCTTATCAT TGGTCCAGCT ATTGGAGGCT ACCTTTCACA GCCTGCAGAG 
    AAATTTCCCA ATGTCTTTTC CCCTGACTCA CTGTTTGCAA GGTTCCCATA 
    TTTCTTACCC TGCTTGTGCA TATCAGTCTT TGCTGCTGTT GTTCTCATAG 
    GCTGCATATG GATGCCAGAG ACATTACACA AGCATAAAGC TGATGCAAGT 
    AGATCCCAAA CTGTTGAAGC TTTGGAGAGC CATTTGATTG ATCCAAAAGA 
    AAAGGCTGAC CAAAATGGTA GTTTGGACTG CAAGAAGAGC TTATTGAGAA 
    ATTGGCCCTT GATGTCCTCC ATAATTCTCT ATTGTGTCTT CTCCTTTCAT 
    GATATGGCTT ATACAGAGAT ATTCTCTCTA TGGGCAGAAA GTGACAGGAA 
    GTACGGTGGG CTGAGTTTGT CATCTGAAGA TGTGGGTCAA GTGCTTGCAA 
    TCACAGGTGT CAGTCTTCTT GTGTATCAAC TCTTCATTTA TCCTCGTATC 
    AATAAGGTTA TAGGGCATAT TAAGGCTTCT CGAATTGCAG CTATTCTGTG 
    CATACCTATT CTCTTTGCAT ATCCTTATAT GACATACCTA TCGGGACCTG 
    GATTAACGAT CATACTGAAC ATTGCGTCAG TTATAAAAAA ATAATCTTGG 
    TGTTACCATC ATTACAGGCT GTTTCATCCT ACAAAATAAT GCTGTGCCTC 
    AAGACCAACG AGGGGCTGCT AATGGCTTGG CAATGACAGG AATGTCCTTT 
    TTTAAGGCAG TGGCTCCAGC AGGGGCGGGC ATTGTGTTCT CGTGGGCACA 
    AAAACGCCAG CATGCTTCCT TCCTTCCAGG TGATCAGATG GTGTTCTTTC 
    TTTTGAATCT CTTCGAGTTG CTTGGACTTA TCCTCACTTT CAAACCCTTT 
    CTGGCCGTAC CAGAGCAGCA CGATACAAAT TAGACTGTTC AGGTATACTA 
    CAGATCTAGA TTCTTCAGAA CTTCAGATGT TGGCAATTTC ATGAGCCCTG 
    CAGCCCGCTG TGTGAAGCAA AGGTATAACA TATGCTCATC TGGATCCCCC 
    AGGAGCAATA GATAGAAGCG AGAGTACTAC TCTGTCCCAA AGAATCAAAG 
    CTAGGGTTTG ATTATTTTTG GGACGGAGGG GTAGGTGCCA GATATGCAAT 
    TGCAGCATTT CAGCGAAAGG AATATATATA GTTGGGGTAA ATGGTGGCCA 
    CTGATGGCTA GGTTTTTCAT GGCCAGCCAG CATGTATACC GAGTAGCATT 
    CTACCAGTAT AATGAATATA GTACTATGTA CATTGTAACT AGTAAAACTC 
    TGTAAGTGAC ATCAGCTTGA GAATGAAATT ATTGCTGGAA TCGAGATCAG 
    TACATTGCT

    Gene models with high sequence identity

    1. AT3G43790.1 [+] show detail - zinc induced facilitator-like 2
      E-value: 6e-136; Score: 102.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Major facilitator superfamily, general substrate transporter 9.9e-21
    superfamily Major facilitator superfamily, general substrate transporter 0.00000000001
    ProfileScan MFS 15.163
    HMMPanther MAJOR FACILITATOR SUPERFAMILY ANTIPORTER 1.4e-23
    HMMPanther MAJOR FACILITATOR SUPERFAMILY MEMBER 1.4e-23
    HMMPanther MAJOR FACILITATOR SUPERFAMILY ANTIPORTER 1.3e-53
    HMMPanther MAJOR FACILITATOR SUPERFAMILY MEMBER 1.3e-53
    HMMPanther MAJOR FACILITATOR SUPERFAMILY ANTIPORTER 2e-54
    HMMPanther MAJOR FACILITATOR SUPERFAMILY MEMBER 2e-54
    HMMPfam Major facilitator superfamily MFS-1 0.000000000000024
    HMMPfam Major facilitator superfamily MFS-1 0.0000000004

    See the detailed result >

    AT3G43790.1

    Model type
    Protein coding
    Short Description
    zinc induced facilitator-like 2
    Computational Description
    zinc induced facilitator-like 2 (ZIFL2); CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: zinc induced facilitator-like 1 (TAIR:AT5G13750.1); Has 22616 Blast hits to 21614 proteins in 2597 species: Archae - 368; Bacteria - 16981; Metazoa - 1046; Fungi - 2343; Plants - 376; Viruses - 0; Other Eukaryotes - 1502 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR