K24920

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24920

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24920

Determination of introduced cDNA(s)

  • J033111K17 - Rice Full-length cDNAs - Original: J033111K17

    full reading [+] show sequence

    Nucleotide sequence: J033111K17 - full reading 
    GAGTTGCGAA GAAAGCAGTC TAGAAAGGTG AAGATAGCTA AACGGTGTGA 
    CAAGCAAGGT AATAGAAAGG CGCGATCATG GCGAGTGCCA AGGCGATGGC 
    GCAGGATGAG CATCACTTTG TTCTGAAGAG TGGTCATGCC ATCCCTGCAG 
    TTGGGTTAGG CACTTGGAGG GCCGGCTCAG ATACTGCTCA CTCCGTTCAG 
    ACAGCCATCA CTGAGGCTGG ATACAGGCAT GTAGATACGG CTGCTCAATA 
    TGGAATAGAA CAGGAGGTCG GCAAAGGGCT TAAAGCTGCG ATGGAAGCTG 
    GAATCAACAG GAAAGATTTG TTTGTGACGT CAAAAATATG GTGCACAAAC 
    TTGGCTCCTG AGAGAGTTCG ACCAGCATTA AAGAACACGC TGAAGGATCT 
    CCAGTTGGAT TATATCGACC TTTACCTTAT TCATTGGCCC TTCCGTCTAA 
    AAGATGGAGC ACACCAGCCT CCTGAGGCTG GGGAAGTCTT GGAGTTTGAC 
    ATGGAGGCAG TATGGAGGGA AATGGAGAGA CTTGTGACAG ATGGACTGGT 
    TAAGGACATT GGTGTCTGCA ATTTCTCAGT TACCAAGCTC AACAGACTGT 
    TGCAATCAGC TAATATTCCA CCTGCAGTAT GCCAGATGGA AATGCACCCT 
    GGTTGGAAGA ACAATAAGAT TTTCGAGGCC TGCAAAAAAC ATGGAATTCA 
    TGTTACTGCC TACTCCCCAC TGGGTTCTTC TGAAAAGAAC CTTGCGCATG 
    ATCCAGTTGT CGAGAAGATA GCCAACAAGC TGAACAAGAC TCCAGGTCAA 
    GTGCTCATCA AGTGGGCTCT CCAAAGGGGA ACAAGCGTTA TTCCAAAATC 
    AACTAAAGAT GAAAGGATTA AGGAGAATAT GCAGGTGTTT GGATGGGAGA 
    TCCCTGAAGA GGACTTCCAG GTCTTGTGCG GCATCAAAGA TGAGAAGCGA 
    GTCCTGACAG GAGAGGAGCT CTTCGTGAAC AAGACCCATG GGCCATACAA 
    GAGTGCATCT GAGGTCTGGG ATAACGAGGA CTAAGCTGCC ATGTTTCACC 
    CAAAGATATG GCAAATAATG GTTATGATGT TGGTCATGCA CGAAGGAGTT 
    ATGTGATGTT CTCCAAGCAC TGTGACGAAA CCAGCTAACT CAGCACAAGA 
    TGTACTACTA TGTGTAAAAC TAGTATTGTT CTATGTGTGC TCTTCTTCAA 
    GCTTTGTGTA ACCAGCTTCT CAGCACAAGA TGTACAGCCA GTGCTGTAAG 
    ATAAATAAAA GTATCATGGC TTTGCCGTTG C

    Gene models with high sequence identity

    1. AT5G01670.1 [+] show detail - NAD(P)-linked oxidoreductase superfamily protein
      E-value: 6e-120; Score: 427.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Aldo/keto reductase, conserved site 0
    PatternScan Aldo/keto reductase, conserved site 0
    PatternScan Aldo/keto reductase, conserved site 0
    HMMPanther ALDO-KETO REDUCTASE 1.5e-105
    HMMPanther Aldo/keto reductase 1.5e-105
    FPrintScan Aldo/keto reductase subgroup 3.7e-49
    FPrintScan Aldo/keto reductase subgroup 3.7e-49
    FPrintScan Aldo/keto reductase subgroup 3.7e-49
    FPrintScan Aldo/keto reductase subgroup 3.7e-49
    FPrintScan Aldo/keto reductase subgroup 3.7e-49
    Gene3D Aldo/keto reductase 2e-91
    superfamily Aldo/keto reductase 5.4e-88
    HMMPfam Aldo/keto reductase 1.5e-56

    See the detailed result >

    AT5G01670.1

    Model type
    Protein coding
    Short Description
    NAD(P)-linked oxidoreductase superfamily protein
    Computational Description
    NAD(P)-linked oxidoreductase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: oxidation reduction; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), Aldo/keto reductase subgroup (InterPro:IPR020471), Aldo/keto reductase, conserved site (InterPro:IPR018170); BEST Arabidopsis thaliana protein match is: NAD(P)-linked oxidoreductase superfamily protein (TAIR:AT2G37770.2); Has 19068 Blast hits to 19040 proteins in 2308 species: Archae - 339; Bacteria - 12194; Metazoa - 2060; Fungi - 1600; Plants - 1171; Viruses - 0; Other Eukaryotes - 1704 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR