K25017

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25017

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25017

Determination of introduced cDNA(s)

  • J013097F07 - Rice Full-length cDNAs - Original: J013097F07

    full reading [+] show sequence

    Nucleotide sequence: J013097F07 - full reading 
    GGCCCGTCTC CTCTTCGGCC GTCTTTGCTC GACCGGAGCG GAGCGCAGCG 
    CAGGCCAACG GCGTGGACGA CGCGCGCCCC CTCTGGATCG CCGCTCCCCC 
    GCGCGCCACA GCTTCCATCC GGCGACTGCA AGGCCGCCCA AGCCAAGAGG 
    GTTTCTTTGC AAGCTTTAGC CGCTCGACGT TCATTGACAG AACATGCCTA 
    AAATAAAGAC AAGCCGTGTC AAATATCCTG GAGGATGGGA GCTTATTGAA 
    CCAACTATCC GTGAGTTGGA TGCCAAAATG AGGGAAGCTG AAAATGACAC 
    ACATGATGGG AAGAGAAAGT GCGAAGCCCT CTGGCCAATT TTCCGTATTT 
    CCCATCAAAG AAGTCGCTAC ATATATGATC TTTATTACAG AAGGAAGGAG 
    ATATCAAAAG AGTTGTATGA GTTTTGCCTG GACCAGGGTT ATGCAGACCG 
    TAATCTGATT GCAAAGTGGA AAAAGCCGGG TTATGAGCGC CTTTGCTGTC 
    TTCGATGCAT ACAGACACGA GACCACAACT TTGCAACTAC ATGCGTCTGC 
    CGGGTCCCCA AGCATCTCAG AGAGGAGAAG GTTATAGAAT GTGTTCACTG 
    TGGATGCAGA GGCTGTGCCA GCGGTGATTG AGATATCGTC ATTATCTTGT 
    TTGAATCTGT CAAACTAAGC AGACATAATG TTTCTTGAGC GAAATTTCGG 
    CTAAAAACGT TTACGAAAAC GTTTTGTAAA CCCGCCTACC GGGTATGACG 
    TTATTTAAGT ACCTGAGATT GTGGTTACGG TCTGCATTAA TCTGCCGCAT 
    GGTCATTGCT TGATCATCGG CCTCAACACC CTGCATATGT GTATTCTAAA 
    GTTTTTTAAT GGAAACATCT GTTACTCT

    Gene models with high sequence identity

    1. AT4G21110.1 [+] show detail - G10 family protein
      E-value: 2e-79; Score: 292.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther G10 protein 4.1e-91
    FPrintScan G10 protein 4.4e-59
    FPrintScan G10 protein 4.4e-59
    FPrintScan G10 protein 4.4e-59
    FPrintScan G10 protein 4.4e-59
    FPrintScan G10 protein 4.4e-59
    Coil coiled-coil 0
    HMMPfam G10 protein 2.8e-62
    PatternScan BUD31/G10-related, conserved site 0
    PatternScan BUD31/G10-related, conserved site 0

    See the detailed result >

    AT4G21110.1

    Model type
    Protein coding
    Short Description
    G10 family protein
    Computational Description
    G10 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: G10 protein (InterPro:IPR001748), BUD31/G10-related, conserved site (InterPro:IPR018230); Has 466 Blast hits to 466 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 189; Fungi - 126; Plants - 80; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR