K25017

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25017

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25017

Determination of introduced cDNA(s)

  • J013097F07 - Rice Full-length cDNAs - Original: J013097F07

    full reading [+] show sequence

    Nucleotide sequence: J013097F07 - full reading
    GGCCCGTCTC CTCTTCGGCC GTCTTTGCTC GACCGGAGCG GAGCGCAGCG 
    CAGGCCAACG GCGTGGACGA CGCGCGCCCC CTCTGGATCG CCGCTCCCCC
    GCGCGCCACA GCTTCCATCC GGCGACTGCA AGGCCGCCCA AGCCAAGAGG
    GTTTCTTTGC AAGCTTTAGC CGCTCGACGT TCATTGACAG AACATGCCTA
    AAATAAAGAC AAGCCGTGTC AAATATCCTG GAGGATGGGA GCTTATTGAA
    CCAACTATCC GTGAGTTGGA TGCCAAAATG AGGGAAGCTG AAAATGACAC
    ACATGATGGG AAGAGAAAGT GCGAAGCCCT CTGGCCAATT TTCCGTATTT
    CCCATCAAAG AAGTCGCTAC ATATATGATC TTTATTACAG AAGGAAGGAG
    ATATCAAAAG AGTTGTATGA GTTTTGCCTG GACCAGGGTT ATGCAGACCG
    TAATCTGATT GCAAAGTGGA AAAAGCCGGG TTATGAGCGC CTTTGCTGTC
    TTCGATGCAT ACAGACACGA GACCACAACT TTGCAACTAC ATGCGTCTGC
    CGGGTCCCCA AGCATCTCAG AGAGGAGAAG GTTATAGAAT GTGTTCACTG
    TGGATGCAGA GGCTGTGCCA GCGGTGATTG AGATATCGTC ATTATCTTGT
    TTGAATCTGT CAAACTAAGC AGACATAATG TTTCTTGAGC GAAATTTCGG
    CTAAAAACGT TTACGAAAAC GTTTTGTAAA CCCGCCTACC GGGTATGACG
    TTATTTAAGT ACCTGAGATT GTGGTTACGG TCTGCATTAA TCTGCCGCAT
    GGTCATTGCT TGATCATCGG CCTCAACACC CTGCATATGT GTATTCTAAA
    GTTTTTTAAT GGAAACATCT GTTACTCT

    Gene models with high sequence identity

    1. AT4G21110.1 [+] show detail - G10 family protein
      E-value: 2e-79; Score: 292.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther G10 protein 4.1e-91
    FPrintScan G10 protein 4.4e-59
    FPrintScan G10 protein 4.4e-59
    FPrintScan G10 protein 4.4e-59
    FPrintScan G10 protein 4.4e-59
    FPrintScan G10 protein 4.4e-59
    Coil coiled-coil 0
    HMMPfam G10 protein 2.8e-62
    PatternScan BUD31/G10-related, conserved site 0
    PatternScan BUD31/G10-related, conserved site 0

    See the detailed result >

    AT4G21110.1

    Model type
    Protein coding
    Short Description
    G10 family protein
    Computational Description
    G10 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: G10 protein (InterPro:IPR001748), BUD31/G10-related, conserved site (InterPro:IPR018230); Has 466 Blast hits to 466 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 189; Fungi - 126; Plants - 80; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR