K25019

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased width (PATO:0000600) (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25019

Determination of introduced cDNA(s)

J013001C24 - Rice Full-length cDNAs - Original: J013001C24

full reading [+] show sequence

GTAGCAGCAG CGGCCGGCCA TCATCAGTGA TCCTCTACAA TCATCGACTT 
TCAGCAAATT AAGATGGCTG CTGCCTTCTC CTCCACCGTT GGAGCTCCGG 
CGTCCACTCC GACCAACTTC CTGGGGAAGA AGCTGAAGAA GCAGGTGACA 
TCGGCGGTGA ACTACCATGG CAAGAGCTCC AACATCAACA GGTTCAAGGT 
GATGGCCAAG GAGCTGGACG AGGGCAAGCA GACCGACCAG GACAGGTGGA 
AGGGTCTCGC CTACGACATC TCCGATGACC AGCAGGACAT CACCAGGGGG 
AAGGGTTTCG TCGACTCCCT TTTCCAGGCT CCCACGGGTG ATGGCACCCA 
CGAGGCCGTC CTCAGCTCCT ACGAGTACCT CAGCCAGGGT CTCAGAACGT 
ACGACTTCGA CAACACCATG GGAGGCTTCT ACATCGCCCC TGCTTTCATG 
GACAAGCTCG TCGTCCACAT CTCCAAGAAC TTCATGACCC TCCCCAACAT 
CAAGGTCCCA CTCATCCTGG GTATCTGGGG AGGCAAGGGT CAGGGAAAAT 
CCTTCCAGTG TGAGCTCGTC TTCGCCAAGA TGGGGATCAA CCCCATCATG 
ATGAGCGCCG GAGAGCTGGA GAGCGGCAAC GCCGGAGAGC CGGCGAAGCT 
GATCAGGCAG CGGTACCGTG AGGCGGCAGA CATCATCAAG AAGGGGAAGA 
TGTGCTGCCT CTTCATCAAC GATCTGGACG CGGGTGCAGG TCGCATGGGA 
GGCACCACCC AGTACACGGT GAACAACCAG ATGGTGAACG CCACCCTGAT 
GAACATCGCC GACAACCCAA CCAACGTGCA GCTCCCCGGG ATGTACAACA 
AGGAGGACAA CCCCCGTGTC CCCATCATCG TCACCGGCAA CGACTTCTCC 
ACGCTGTACG CGCCGCTCAT CCGTGACGGG CGTATGGAGA AGTTCTACTG 
GGCTCCCACC CGCGACGACC GTGTCGGCGT CTGCAAGGGT ATCTTCCGCA 
CCGACAACGT CCCCGACGAG GACATCGTCA AGATCGTCGA CAGCTTCCCA 
GGCCAATCCA TCGATTTCTT CGGCGCTCTT CGTGCCCGTG TTTACGACGA 
CGAGGTGCGC AAGTGGGTGT CGGACACGGG TGTGGAGAAC ATTGGCAAGA 
GGCTGGTGAA CTCGAGGGAG GGCCCACCGG AGTTCGAGCA GCCCAAGATG 
ACGATCGAAA AGCTCATGGA GTACGGATAC ATGCTTGTGA AGGAGCAGGA 
GAACGTCAAG CGTGTGCAGC TGGCTGAGCA GTACTTGAGC GAGGCTGCTC 
TTGGTGACGC TAACTCCGAC GCCATGAAGA CTGGTTCCTT CTACGGTTCT 
GCGCCATCCA GCTGAATAAA AGATCTCTAG CTATTCGCAT CCCATCGATG 
CATCGTAGGC GGCCTGCATA GGAGGAGGAG GGCAAGGAGC ACAGCAAGCA 
GGTAACCTGC CTGTGCCGGA AGGTTGCACC GACCCTGTTG CCAAGAACTT 
CGACCCAACG GCGAGGAGCG ACGACGGCAG CTGCCTTTAC ACCTTTTAAG 
CAGGCCGGCT TGACGCTTGC TATTAATTAT TTCTCCTTTT TATGTTTTCT 
CTTTGTTCTG TGTATCAGAT CGCGCCCAAG CCATAGCTGG GCATGACAAG 
TTTTTGTTAA TAATAATATA ATATAAAGGT

Gene models with high sequence identity

AT2G39730.1 [+] show detail - rubisco activase
E-value: 0; Score: 66.20

InterPro Scan Digest

Program	Description	E-value
Gene3D	no description	0.000000000011
HMMPfam	ATPase, AAA-type, core	0.0000000000000043
superfamily	P-loop containing nucleoside triphosphate hyd	1.7e-21

See the detailed result >

AT2G39730.1

Model type: Protein coding
Short Description: rubisco activase
Curator Summary: Rubisco activase, a nuclear-encoded chloroplast protein that consists of two isoforms arising from alternative splicing in most plants. Required for the light activation of rubisco.
Computational Description: rubisco activase (RCA); FUNCTIONS IN: enzyme regulator activity, ADP binding, ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity, ATP binding; INVOLVED IN: response to cold, response to light stimulus, defense response to bacterium; LOCATED IN: in 11 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G73110.1); Has 2406 Blast hits to 2358 proteins in 526 species: Archae - 328; Bacteria - 489; Metazoa - 254; Fungi - 429; Plants - 406; Viruses - 0; Other Eukaryotes - 500 (source: NCBI BLink).
Link: InterPro Scan - TAIR