K25020

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25020

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25020

Determination of introduced cDNA(s)

  • J013130L24 - Rice Full-length cDNAs - Original: J013130L24

    full reading [+] show sequence

    Nucleotide sequence: J013130L24 - full reading 
    GGCCATTGAC TCCCCCTCTT CTCTCTCAGT TCTCTCGCTT CGAATCCGAT 
    CGAAGCGCAC ACAAAAGAGG AGAGGAGAAG CAAACAAATT CGGCTTCTTC 
    TTCTTCTTCA TTTTTTTTTC GATTTTTGAA CTCGCGGAAG CGAGCCGCCG 
    CCGCCGAGTC CACTCGCTTT CTCCCCCCGC TCCGCCGCCG ATTCGATCCG 
    AAGGGAGGCA GCGAGCGAGA GAGAGAGGTT TGTCCTGTGA AGGCGGCGAT 
    GCCGCTGGCG GAATCGCCTC AGTGGCGCCA GAAGGCCACG AATTTCTTCT 
    CTTCATCCAG CTTCAAGCTG AAGCAGGCAG GGCAATCAGC AGGGGACAAT 
    ATAGCTGATG TTGCTGGCAA GGTTGGTTCA GTGGTTAAGA GTCGGTGGGC 
    TGTCTTCCAG GAGGCTAGGC AGAGGCAGCC GCCACCAGGG GAGACTGTGC 
    AAGAGCGTTT CATCTCTGCT GCTGCCACCA CTGGGGTGCT TCTGAGGAAG 
    GGCATTTCAG AGACAAAGGA GAAAGTTGCA GTGGGAAAGG TCAAAGTTGA 
    AGAGGCTGCT AAAAAAACTG CTGACAAAAG CAAGACTATT TTGAACAACA 
    TTGAACGCTG GCAGAAGGGA GTCGCCAGCA CTGATGTCTT TGGTGTTCCC 
    ATTGAAGCCA CCGTACAACG AGAGCAATCT GGTAAAGCTG TGCCTCTGGT 
    ACTTGTGAGA TGTGCAGATT ATCTGGTTAT ATCAGGTTTG AGTAATGAGT 
    ACTTGTTCAA ATCAGAGGGT GAAAAAAAAG TTCTTCAGCA ATTAGTCTCT 
    CTTTACAATG AAGATTCAGG TGCACCTTTC CCTGATGGTG TAAACCCCAT 
    TGATGTGGCT GCACTGATAA AGTGCTATCT TGCTAGCATC CCTGAGCCAC 
    TTACTACATT CTCTCTTTAT GATGAACTTA GAGATGCAAG GGTTAGCATT 
    GCAGATTTAA GAAATATACT GAAGAAGCTT CCCAATGTGA ACTACATGAC 
    ACTAGAGTTT GTTACAGCAC TGCTACTTAG AGTAAGCCGT AAATCATCGC 
    TTAACAAGAT GGACTCTCGT AGCCTTGCAG TGGAATTTGC GCCTTTGATC 
    ATGTGGCAGC AAGGTGACTC TGGAACAGAT TTGCGGAATC ATCTTAGATT 
    TACCCTAAAA GCACCTCCAA AAATTGTGGA TACAACATCA AATACCACAG 
    AATGGGATCT GTTAGATGAG GATGATGTGG ATGCATCTTC CCAAATCCCC 
    TTGGATGACG CGTCGCCCCC AGATTACAGC TCAATTGAGG TCATCCAATC 
    TCTCATTGAG CATCACAATG CCATTTTCAC TGATGCGAAC GAGACCGTAT 
    GGAGATAGCC AGCGTCTCTA GATTTCACTG GTGTTATTAG CTCGTGCAAT 
    GTACAAGTTC CAGGTAGGAG GATGGAGTAT TTGCACATTG TCGTCAGGGA 
    GACGCATTTT GGTCGAAATA TTTCTTAAAA TAGATTTGTA TATATACTAG 
    TATTAATTCT CCATAGGAGG AATCTATTTG TAGGACCCTC GGCACGTCTC 
    ATCAATAAAG CTTTCTGGTG CCTTATAATG TTCGGTTGTA AACCTGGTAG 
    ACATGTTATG ATGTGCCTTA TACTCGTGTT CTTCATGGCA AATTACTATT 
    GTATGAACTG CACTGATGAT AAAGGTTACC AGAAACCATT GGTCGTTCGA 
    AATCCTCTCT AAGAACAAAA CAGTTGTTGC AGTGGTTAAT ATGAGGATTC 
    AGCCGTATAG ATGTGCAACT TCCC

    Gene models with high sequence identity

    1. AT5G61530.1 [+] show detail - small G protein family protein / RhoGAP family protein
      E-value: 9e-109; Score: 391.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Rho GTPase activation protein 1.1e-38
    Gene3D RhoGAP 6.7e-36
    ProfileScan RhoGAP 31.408
    HMMPfam RhoGAP 6.5e-30
    HMMPanther RHO/RAC/CDC GTPASE-ACTIVATING PROTEIN 1e-24
    HMMSmart RhoGAP 5.1e-30

    See the detailed result >

    AT5G61530.1

    Model type
    Protein coding
    Short Description
    small G protein family protein / RhoGAP family protein
    Computational Description
    small G protein family protein / RhoGAP family protein; FUNCTIONS IN: Rho GTPase activator activity; INVOLVED IN: signal transduction; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rho GTPase activation protein (InterPro:IPR008936), RhoGAP (InterPro:IPR000198); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR