K25114

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25114

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25114

Determination of introduced cDNA(s)

  • J033074P14 - Rice Full-length cDNAs - Original: J033074P14

    full reading [+] show sequence

    Nucleotide sequence: J033074P14 - full reading 
    GGGAAGTGCG AAGCTTAACG GACCAAGCGA GAGCGAGAGC GAGAGAGATG 
    ATGGTGCTGT TGTTGCTGAT GGCGCTGGTT TACTGCTCCT GAGGGGTAGG 
    GAGGGAGGGG AAGGAGCACG TTCGCTTGTG GAGCGGTTGG GTGGGTGGTG 
    ATTCTTCTTG GCGCAGCCGG CCAGGTGAAA ACGGCCGCCC ACCGGCTTTG 
    CTCTGTAGTG TCCGCTGCTG ATTGCTGAGG CTCCCGCTGC TCCGTTCTTC 
    GCCGGTGGTG TTCTTGATTT CGTCGGGGGG AAAGATTCCA GGTTAACAGG 
    CGTGGATTTG ATTGGGGGGA AATCTTGGGA TATCGAGCGC AAAGATGCGG 
    ATTTGATGCA TCGTTTTTTC CTCACTTCTT TTCAGCCGTC AGTCGGAGCA 
    AGCAGATGTT TTGAATCCAG ATTCCAACCG AGGGGAACAG CCTGCTCGGA 
    GTGTGCGTGT GACGGTGTGA GTGATAAGTA GGGCGGTTGC GCACGAGGTG 
    TTCGTCAGAA AGCCGCAAAG GAGAAGGTGG GCGTGCAACT TGCAACCGTC 
    GCCATCGTCA CGATGAGAGA CTTTGCATCT TGCTTAAGTC AAAGCGGCGT 
    CCAGGTCGCC CATTCCTCTT CTCCAGGTGG CCAGAACATG GTGCAGTGCA 
    CCTACCTAGC CCGCCTCCGT GGCAAATCTT GCAGCGTGAC CGTCACCTGG 
    AGCAAGATGA CCATGGGGCA GGCTCTGTCC GTCGCAGTCG ACGACTCCTC 
    GAATCGTTGC CTTTGCAAGG CAGAGATAAA GCCATGGCTG TTCTCCAAGA 
    GGAAAGGTTC CAAGGCCATG GAGGTCGATG GTGGAGCACT GGATATCGTC 
    TGGGACCTGT CCTCTGCGAA GTTTGCGGCC GGGCCAGAAC CCGTCGAAGG 
    CTTCTATGTT GCCCTGGTCT GTGATCTTGA AGCTGTTCTT GTGCTCGGCG 
    ACATGCGCAA GGATGGGGAT CACAGGGTTT CGTCAGATGT ATTGGCCTCC 
    AATGCTGTCA TGATAGCCAG GAAGGAACAT GTTTATGGGA AGAAGGTGTA 
    TTCAGCGAAG GCCCGGTTTT TGGACATTGG TCAGCTCCAC CATATCACGA 
    TAGAGTGTGA CACATCGGGG TTGAAGGATC CAAGCCTAGA AATCAGGATT 
    GGCAAGAAGA GAGTCATGCA GGTGAAGAGA CTTGCATGGA AGTTCAGGGG 
    AAACCAGACA GTCTATGTTG ATGGACTTCC AGTAGAGGTC CTATGGGATG 
    TTCATGACTG GCTATTTGGT TCATCGAATA AATGTGCCGT GTTCTTGTTT 
    CAGTCAGGCC AATCCATGGA AAAATTGCTG TCAAGGTCAT GCTCTCAGAA 
    TGAAAAGGAG CTTCAAGCGC ATCGTTTTGG CTTCACTTTG ATACTTAATG 
    CATGGAAGAC CGAATAGGCA GAAACATGAT GACAAGTTTC TTCGGCCATT 
    CTACCGTAAA TTAATGAATC CTAACAGTAA GAATATGCAA GCCTGACAAA 
    ACCTTGTGCA AGGATTTCAT GCTTCTTAAC TATTGTGTTC TAGTGATGAT 
    TAGCAAGTTG AGAATTTGAG TACCCATATA ATTTTTTCTA GATAGGTAGT 
    TAGACAGAAT GTCAGATTCT AGTGCCCCAT TTGTATTATC ATGTCTTTGA 
    CATATACATT CTGATCACAA ATCCAAGAAG CAAAGCAAAA AAATGATGCT 
    TTTCCG

    Gene models with high sequence identity

    1. AT5G28150.1 [+] show detail - Plant protein of unknown function (DUF868)
      E-value: 1e-82; Score: 304.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G28150.1

    Model type
    Protein coding
    Short Description
    Plant protein of unknown function (DUF868)
    Computational Description
    Plant protein of unknown function (DUF868); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF868, plant (InterPro:IPR008586); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF868) (TAIR:AT3G04860.1); Has 292 Blast hits to 290 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 292; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR