K25118

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25118

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25118

Determination of introduced cDNA(s)

  • J033093C21 - Rice Full-length cDNAs - Original: J033093C21

    full reading [+] show sequence

    Nucleotide sequence: J033093C21 - full reading 
    GGCCTCCTCG TCTTCTCCGA ACGAAGCCTT CCCCTTTTTC TTCCTCGTCT 
    TCCACCAAGA ACCCCAAGGA TTTGGAGTTC GAGGTCTCTC TCCCCGGCAA 
    AGCGAGAGAG CAAGATAGAG AGGCCAGAGC CCGACCCATC GCCTGCTGCC 
    TGACTGCCGT CTGCCGGACT CCAAGAAAGC GGGGGTTGGC TTCTTGCGCG 
    CGCGGGAGGG ACAGGGTGTA GCTGTAGCGT CGTCCGGCAA AGGCGGGGGG 
    AGGGCCCCGG CCGCGGCCGC TCAAGTCCGG CGACATCCGT GGCCGCCGCC 
    GACGCGGTCC TCTACCTCCT GGGGAGAGAG CCAGGATTTG TTTATACAGC 
    ATTCAACTTC TACCATGAGT CACACCTTGA TATACATGAC ATCGAGATAA 
    AGAAGATCCC GCAGGGTACC CTAATCAGAG TAGTGCTCAA AGGCCTCGAA 
    CACATCGAGT TTCAAGCCAA TGCTGATGTT GCCGATGATG AAAACTTCCA 
    CCATTTCATT GCTCTAGACC TACTCACCAA AGATTTAGGT GAGCTGAAAA 
    TGCAAATTAC TGGCCGTGCA AACCCTGATT TTGTTGAGAC TGCCAAAGAG 
    AAAAAGAATG ACGCTGTCAA GACTGTCGAA CCGCATGGGA GCGATTATGC 
    TGAGGACGCC ATACCGCGTC GGATGCAGCC AAAGTGAAAA GCGAAGGATT 
    ACTCTGTCCA GCTCACCGAA GTGTCAAGTT CCGATTCTGG TGAGATCAGC 
    AGAGCGCATA AGAAGCAGCT ACTACAGAAG GCAAAGGCCA CCGAAGTGCC 
    AAATACCACC GCAGTGCATA GGGAGCAGCC TGTGCAGAGA GGGAGGGGGC 
    AGAGGCGACG GCGAGGGCGA GGAGGAGGAA GAGGAAAAGG GAGAATCAGA 
    GAATGTAAGT TTGTCCATGG GTAAGGAAAT GCAAATATCA TGATGAGGAG 
    TGCAGCTCAA TTTAGAGGTT GAGTATGTGA AAGTAGATTT TACAGGATTT 
    GCTAGAGCAA GTGAGTAACC TCAATTGATG GCTATGGGAT TAACATTTTT 
    TGCTCTGCTT AAATTTTGAT CGATTTTATC TGATGTGGGT TATAGAGCGT 
    ATCTGATGTG CTTGAGAAGA ATAGTTACTG CTTTTCCATG GTATACTTGG 
    CAACTCATGT GAAAGGGATT TTGACATGAA CCACTGTGAT ATTATTAAAC 
    ATTCTGCATT TGTT

    Gene models with high sequence identity

    1. AT5G67320.1 [+] show detail - WD-40 repeat family protein
      E-value: 0.000000004; Score: 59.70

     

    InterPro Scan Digest

    See the detailed result >

    AT5G67320.1

    Model type
    Protein coding
    Short Description
    WD-40 repeat family protein
    Curator Summary
    Encodes a WD-40 protein involved in histone deacetylation in response to abiotic stress.Identified in a screen for mutations with altered expression of stress induced genes. Functions as a repressor of cold tolerance induced genes. Loss of function mutants are hypersensitive to freezing.
    Computational Description
    high expression of osmotically responsive genes 15 (HOS15); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), LisH dimerisation motif, subgroup (InterPro:IPR013720), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: TBP-associated factor 5 (TAIR:AT5G25150.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR