K25136

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25136

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25136

Determination of introduced cDNA(s)

  • J013048E04 - Rice Full-length cDNAs - Original: J013048E04

    full reading [+] show sequence

    Nucleotide sequence: J013048E04 - full reading
    GACAGAAGAG AGACAGGGGA GAAAACCCTA ATCTCAAGGC CGCGGCTGTG 
    AGCGCTCCTC CCGTCTCTCC CCCAACCCGC CGCCAGCCAC CGAGCTCGCC
    ACCGTCTCCG TTGCCTCGCC GTGCTCTAGG TTCTCGGATG GAGGCCGAGG
    CGGCGGCGAA GAGGGCGCGG GAGAGCGGTG ACGCGGCGGC GGCCGGTGCC
    GGCGAGCAGG CGGGTATCTC TGCCGTCATC CCTGGATGGT TCTCCGAGAT
    TAGCCCCATG TGGCCTGGTG AGGCACACTC ATTGAAGGTC GAAAAGGTAC
    TATTCCAAGG AAAGTCGGAC TACCAAAATG TGATGGTGTT TCAGTCCTCC
    ACGTACGGCA AGGTGCTTGT GCTGGATGGA GTGATTCAGG TCACTGAGAG
    GGATGAGTGT GCTTACCAAG AGATGATTAC CCACCTCCCC CTTTGCTCTA
    TCAAAGATCC CAAGAAGGTG TTAGTTATTG GAGGTGGAGA TGGTGGTGTT
    TTGCGTGAAG TTTCACGACA TTCCTCGGTG GAGCAAATTG ACATATGTGA
    AATTGATAAG ATGGTGGTAG ATGTCTCCAA ACAATTTTTT CCTCATCTGG
    CTGTTGGATT TGAAGACCCC CGTGTGTCAT TACACATTGG AGATGGCGTG
    GCCTTTTTGA AAAATGCTCC AGAGGGTACT TATGATGCAG TTATTGTGGA
    TTCCTCTGAT CCAATAGGAC CGGCTCAAGA GCTTTTCGAG AAGCCTTTCT
    TCCAGTCAGT TGCCAGAGCT TTGCGTCCTG GTGGTGTTGT ATGTACCCAG
    GCAGAGAGCA TATGGTTGCA TATGCATATT ATTGAAGATA TTGTAGCTAA
    TTGTCGCCAA GTTTTTAAAG GCTCAGTGAA TTATGCTTGG ACAACAGTAC
    CAACATACCC TAGTGGTGTT ATTGGTTTTA TGCTTTGCTC CACCGAGGGG
    CCTACTGTTG ATTTCCAGCA TCCTATTTTT AACATTGAGG ATAATGAGTT
    CTCAACAAAA TCGAAAGGAC CACTTAAGTT CTACAATTCC GAGATCCACT
    CAGCATCATT TTGTTTGCCG TCTTTTGCGA AGAGAGTCAT TGGATCCAAG
    GCCAACTAGA TCAAAGATCA CTGAGCCCAA GGCCAACTGG ACTGGAATCC
    CTCCGACAAG AGATTTGGTT GTAGCAGAAA GAGCAATGAC CCCTTTTTTC
    CCATTTAAAT AAAAATTGGA GATGTAAACG GTTATCCAAG TGCTTTTGAA
    TTTTGTCTCA GTATGAGAAC GTTTTGTATT TGGTAACTGT TTTCCCGCAT
    CTCCCTTACC ATTTACCAAA ATGAGTATTG CTGTAGTTTT CATCTG

    Gene models with high sequence identity

    1. AT1G23820.1 [+] show detail - spermidine synthase 1
      E-value: 9e-145; Score: 510.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Spermine synthase 2.7e-98
    superfamily S-adenosyl-L-methionine-dependent methyltrans 7e-88
    HMMTigr Spermine synthase 2.5e-122
    Gene3D no description 0.00000000073
    Gene3D no description 2.1e-81
    HAMAP SPEE_MF_00198 32.112
    PatternScan Spermine synthase 0
    ProfileScan Spermine synthase 105.815
    HMMPanther SPERMIDINE SYNTHASE 1e-200
    HMMPanther Spermine synthase 1e-200

    See the detailed result >

    AT1G23820.1

    Model type
    Protein coding
    Short Description
    spermidine synthase 1
    Curator Summary
    Spermidine synthase.
    Computational Description
    spermidine synthase 1 (SPDS1); FUNCTIONS IN: spermidine synthase activity; INVOLVED IN: spermidine biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Spermine synthase (InterPro:IPR001045); BEST Arabidopsis thaliana protein match is: spermidine synthase 2 (TAIR:AT1G70310.1); Has 5258 Blast hits to 5255 proteins in 1502 species: Archae - 169; Bacteria - 2896; Metazoa - 353; Fungi - 199; Plants - 416; Viruses - 0; Other Eukaryotes - 1225 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR