K25137

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25137

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25137

Determination of introduced cDNA(s)

  • J033150H12 - Rice Full-length cDNAs - Original: J033150H12

    full reading [+] show sequence

    Nucleotide sequence: J033150H12 - full reading 
    GGCGTTCTCC TCCCTCCAAT CCGCCATGGC GGCGCCCAAG CCACTGTCCC 
    CGCGCCTCGC CGTCCCGCTC GCCATTGCTC TCCTCCTCGC CCTCGGCCTC 
    GTCGCCGACT TCCTCTGGTC ATCATCTTCC TCCTCTGGCA CCTCCGGCCG 
    CGGCCAGCTC GCCTCCGCTT CCAGGACGGC AACGGCGAAG AAGAGCGGTA 
    GGGCGCGCGG GAAGAAGCCG GCGGCGGAGG GCTACCTCAA TGCGACGTAC 
    GCCGACATAC CGGCGCCGCG GTGGGACTGG GAGGAGATGC CGGCGGCGCC 
    CGTGCCCCGC CTCGACGGCT ACTCCGTCCA GATCGGCGAC CTGCTCTACG 
    TCTTCGCAGG GTACGAGAAC CTCGACCATG TGCATTCTCA TGTTGATGTG 
    TACAATTTCA CTTCCAACAC ATGGACGGGG AGGTTTGATA TGCCCAAGGA 
    GATGGCAAAT TCACATCTAG GAATAGCAAC AGATGGGAGG TACATTTACG 
    CGCTGACCGG GCAATTCGGT CCCCAGTGCC GATCACCTAT AAACCGCAAC 
    TTCGTTGTAG ACACAGTGAC AAAAGAGTGG CATGAACTGC CCCCTTTGCC 
    AGTTCCTAGG TATGCACCCG CTACTCAACT TTGGCGTGGA CGGCTCCATG 
    TGATGGGTGG TGGAAAAGAA GATCGCCATG AACCTGGATT AGAGCACTGG 
    AGCTTAGCTG TCAAGGATGG CAAAGCATTG GAGAATGAGT GGCGAACTGA 
    GATAGCCATA CCCCGTGGTG GACCTCATAG GGCATGCATT GTTGCTAATG 
    ATAAACTCTT TGTCATTGGC GGTCAAGAGG GAGACTTCAT GGCAAAACCA 
    GGCTCGCCGA TATTTAAATG TGTACGGAGG CATGAGGTTG TGTACGGTGA 
    TGTGTATATG CTAGATGATG GAAATAAATG GAAGCAACTA TCTCCACTGC 
    CAAAGCCAAA TTCCCACATA GAGTGTGCAT GGGTTATAGT TAATAACTCT 
    GTAATAATTG TTGGTGGAAC TACGGAAAAG CATCCTATTA CCAAAAAGAT 
    GATTCTTGTC GGTGAAGTTT TCCGGTTCGA TTTGGATACA CTGACATGGT 
    CAGTCATTGG CCGCATGCCT TTCCGAATCA AGACGGCCCT AGCTGGTTAC 
    TGGGATGGTT GGCTCTATTT CACTTCTGGG CAGCGAGATA GGGGGCCTGA 
    TAATCCTGCT CCAAAGAAAG TTGTTGGTTG CACGTGGAGA ACAAAACTAC 
    ACCTTTGATG TGGAAAGTTT TAGCTGTTGT TACTGTAGAT TATAGATCAT 
    GACCAGCTGT TGGGTGATTA CTGATGACAC TCTCTGCTGG ATGATTGTGA 
    CTCAGTCATT TCTTCTTCTT CCTTTGTGTA GCTTAAACTT TGCCGGCATT 
    GACAGGGGAC CTGTCACAAT TAACAATGGC TAATCATCAC CGCATGGAAC 
    TGACTTGGTC TTATCGTCTT ATTTAGTAGG ATTTAATTAG GCCCAACTTC 
    TCCGTGGACG CCCGGTCTGG CGGTGGCGGA TGGGCGGCCG GCGATGAGCT 
    CGCCGTCGTT GTCGCCGCTG AGGCGAGCTG CTCGCCCGGT CACCGACTAC 
    CACCTCAAAT CCATGCATGC CGATATATAT TTTCTGAAAG CTCACATCAT 
    CGTATGATAC TAAGTAGGGT CAAAAATTAA ATTTGGTTCG AGTTAAAAAA 
    TGTAGCTGTT CTTGTTACTG AAAATTAGAT ATCATAGAAC TGTTGTGTTG 
    TATATGAAAA CTTTTTAGTA ATCATGGCTT CTAAGCTACA TCATAATCAT 
    GTAGCCTCAT TATTTTTACT AATGAATTCC TGGTCTCCTG GACT

    Gene models with high sequence identity

    1. AT1G51540.1 [+] show detail - Galactose oxidase/kelch repeat superfamily protein
      E-value: 2e-150; Score: 530.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Kelch repeat type 1 0.23
    HMMSmart Kelch repeat type 1 0.88
    HMMSmart Kelch repeat type 1 2.7
    superfamily Galactose oxidase/kelch, beta-propeller 2.3e-36
    HMMPanther KELCH-RELATED 9.2e-17
    HMMPanther Kelch related 9.2e-17
    Gene3D Kelch-type beta propeller 4.9e-39

    See the detailed result >

    AT1G51540.1

    Model type
    Protein coding
    Short Description
    Galactose oxidase/kelch repeat superfamily protein
    Computational Description
    Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT3G27220.1); Has 1998 Blast hits to 1729 proteins in 252 species: Archae - 27; Bacteria - 371; Metazoa - 1276; Fungi - 25; Plants - 123; Viruses - 45; Other Eukaryotes - 131 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR