K25216

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25216

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25216

Determination of introduced cDNA(s)

  • J033108L02 - Rice Full-length cDNAs - Original: J033108L02

    full reading [+] show sequence

    Nucleotide sequence: J033108L02 - full reading 
    GAGCCGGAGG CCGACACGAG GTAAGAAGCC CAGAAGCCCT AGCGCCGCCG 
    CAGCAGCAGC AGCCATGGGT ATCGACCTCG TTGCCGGCGG GAGGAACAAG 
    AAGACGAAGC GCACCGCGCC GAGGTCGGAC GATGTCTACC TCAAGCTCCT 
    CGTCAAGCTG TACCGTTTCC TGGTGAGGAG AACCAAGAGT AACTTCAATG 
    CCGTGATCCT CAAGAGGCTC TTCATGAGCA AGACCAACCG CCCGCCGCTC 
    TCCCTGCGCC GCCTCGCCAA GTTCATGGAA GGCAAGGAGG AGAACAACAT 
    TGCTGTGATT GTTGGTACAG TCACTGATGA CAAGAGGATC CAAGAGATTC 
    CGAAAATGAA GGTTACTGCC CTGAGGTTCA CGGAGACGGC TAGGGCAAGG 
    ATTGTCAATG CTGGCGGCGA GTGCCTCACC TTCGACCAGC TTGCTCTCAG 
    TGCTCCGCTT GGGGAGAACA CGGTCCTCTT GGGGGGTCCC AAGAATGCCC 
    GTGAGGCCGT CAGGCACTTT GGTAAGGCTC CTGGTGTGCC GCACAGCCAC 
    ACGAAGCCAT ATGTGCGCTC CAAGGGAAGG AAGTTCGAGA AGGCCCGTGG 
    CAGGAGGAAC AGCCGTGGAT TCAAGGTCTA AGTCAGCTCC TGTTTGCAAG 
    TGTTGCGATC GGCATTGTGC GACCGTTCTG TTTGAGCAAT CGACAGTAAT 
    TAGTAGTCAC TTCTCTACTG AGACTAGCAA AACTTAATTG TGTCATTTCT 
    GAAAGATATT TTGAAGGATC CTTTCTACCT ACCTACATGC GTTTGTGGGC 
    AAGAAGACAA TGTTTTTTGT TTCC

    Gene models with high sequence identity

    1. AT5G27850.1 [+] show detail - Ribosomal protein L18e/L15 superfamily protein
      E-value: 5e-83; Score: 304.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ribosomal protein L18e/L15 3e-23
    superfamily Ribosomal protein L18e/L15 1.9e-28
    PatternScan Ribosomal protein L18e, conserved site 0
    Gene3D no description 2.5e-26
    HMMPanther Ribosomal protein L18e 1.2e-120

    See the detailed result >

    AT5G27850.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L18e/L15 superfamily protein
    Computational Description
    Ribosomal protein L18e/L15 superfamily protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, vacuole, large ribosomal subunit, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18e (InterPro:IPR000039), Ribosomal protein L18e/L15 (InterPro:IPR021131); BEST Arabidopsis thaliana protein match is: ribosomal protein L18 (TAIR:AT3G05590.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR