K25217

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25217

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • increased height (PATO:0000570)
    (Adult plant::Plant height::tall)
cauline leaf (PO:0000013)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • dark green (PATO:0001249)
    (Stem::Color::dark)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25217

Determination of introduced cDNA(s)

  • J033107J07 - Rice Full-length cDNAs - Original: J033107J07

    full reading [+] show sequence

    Nucleotide sequence: J033107J07 - full reading 
    GTCCCGCCTG AATCCTTCTC CCTCGCCGGG TTAGGGTTTC CTCGCCTCGC 
    CATGGCCTCC TTCACCTCCC AGCTCGGCGC CATGGCGTGC GGCGCCGCCC 
    CCTCCACCTC GCCCCTCGCG GCCCGGAGGA GCGGGCAGCT GTTCGTGGGG 
    CGGAAGCCCG CGGCGGCGTC GGTGCAGATG CGGGTGCCGC GGGCGGGGCG 
    GGCGCGGGGG GTGGCGATGC GGGTGGCGTG CGAGAAGGTG GTGGGGATCG 
    ACCTCGGGAC GACCAACTCC GCGGTGGCGG CGATGGAGGG CGGGAAGCCG 
    ACGGTCATCA CCAACGCCGA GGGCCAGCGG ACGACGCCCT CCGTGGTGGC 
    GTACACCAAG GGCGGGGAGC GGCTGGTCGG GCAGATCGCC AAGCGGCAGG 
    CCGTCGTCAA CCCGGAGAAC ACCTTCTTCT CCGTCAAGCG CTTCATCGGC 
    CGCAAGATGG CCGAGGTCGA CGACGAGGCC AAGCAGGTCT CCTACCACGT 
    CGTCCGCGAC GACAACGGCA ACGTCAAGCT CGACTGCCCC GCCATCGGCA 
    AGCAGTTCGC CGCCGAGGAG ATTTCCGCGC AGGTCTTGAG GAAGTTGGTG 
    GACGATGCAT CTAAGTTTTT GAATGACAAA ATTACCAAAG CAGTGGTTAC 
    TGTTCCTGCA TACTTCAATG ACTCACAGAG GACAGCAACA AAAGATGCTG 
    GACGTATTGC AGGATTGGAA GTTCTCCGCA TTATAAATGA GCCGACTGCT 
    GCATCCCTTG CTTATGGTTT TGAGAAGAAA AACAACGAAA CGATTCTTGT 
    GTTTGACTTG GGAGGCGGTA CCTTTGATGT CTCTGTATTG GAGGTTGGAG 
    ATGGTGTGTT TGAGGTGCTT TCCACATCTG GTGACACACA CCTTGGTGGC 
    GATGACTTCG ATAAGAAAGT TGTGGATTGG CTTGCTAGCA ACTTTAAGAA 
    AGATGAAGGC ATTGATCTTC TGAAAGACAA ACAAGCCCTG CAGCGACTCA 
    CTGAGGCAGC AGAGAAAGCG AAGATGGAAC TGTCTACGCT GTCTCAGACA 
    AACATTAGCT TGCCTTTCAT AACTGCTACT GCTGATGGGC CTAAACACAT 
    CGAGACAACT CTCTCCAGAG CCAAATTTGA GGAGCTATGT TCGGACCTCA 
    TTGATAGGCT TAAAACTCCT GTCACTAATG CCTTGAGAGA TGCCAAACTG 
    TCTGTTGATA ACCTGGACGA AGTGATTCTT GTTGGTGGAT CCACTCGTAT 
    CCCTTCCGTG CAAGAGCTTG TGAAGAAGAT CACTGGCAAG GATCCCAATG 
    TCACAGTCAA CCCTGATGAG GTTGTTTCTC TTGGGGCAGC TGTACAGGGT 
    GGAGTTTTGG CCGGAGATGT GAAAGATGTC GTTCTTCTTG ATGTTACTCC 
    ATTGTCTCTT GGTCTGGAGA CGTTGGGTGG AGTGATGACC AAGATTATTC 
    CCAGAAACAC AACACTGCCC ACCTCAAAAT CAGAGGTATT CTCCACAGCT 
    GCAGATGGAC AGACAAGTGT TGAGATAAAT GTTCTTCAGG GAGAGAGAGA 
    GTTTGTCCGG GACAACAAGT CTCTTGGAAG CTTCCGCTTG GATGGAATCC 
    CTCCTGCACC ACGTGGTGTT CCACAAATTG AAGTCAAGTT TGATATTGAT 
    GCCAATGGTA TTCTCTCTGT TGCTGCTATT GATAAGGGTA CTGGGAAGAA 
    ACAGGATATC ACCATCACCG GCGCTAGTAC ACTGCCAAAG GATGAGGTTG 
    AGAGAATGGT GGAAGAGGCT GACAAGTTTG CTCAGGAGGA CAAAGAGAAA 
    AGAGATGCCA TTGATACCAA AAACCAGGCA GACTCTGTGG TCTACCAGAC 
    TGAGAAGCAA CTGAAGGAGC TAGGTGACAA GGTACCTGCA CCTGTGAAAG 
    AGAGGGTGGA TGCAAAGCTC AACGAGCTCA AAGAGGCCAT TGCGGGTGGA 
    TCAACACAGA GCATGAAGGA TGCCATGGCT GCTTTAAACG AGGAAGTTAT 
    GCAGATCGGC CAGGCCATGT ACAACCAGCA GCCTAATGCT GGTGCTGCTG 
    GACCTACTCC TGGTGCCGAT GCTGGACCGA CAAGCTCAGG CGGTAAGGGA 
    CCGAATGATG GAGATGTTAT TGATGCGGAT TTCACTGACA GCAATTGATA 
    GTTCTAGCGA TTGAAGATTA TTGATGGAAG GATGATCTGT GGTGGATGGC 
    TGTGAGGGTC TGATGGGTGA TGGTATAGGA AGAAGGGAGT GAACAAATTG 
    TTCTTTTTGT TTACTATGGA TCCCATGTTC AATAGGCTCT TTAGTTTGCA 
    ATTTGATAGC GTAGGGTTTT GCCAACATTT TCCTGTGATG TTGAATGAAG 
    GATTATAAAA AGTAGCCTTC AAAAAAAGAG GAGGCAAAGG TTTTGATCGA 
    AGAAGTAGCT GATTGATATG ACCTTGTTCC TTGAAAATAA AAATATCATT 
    AGTTCCCTGT GC

    Gene models with high sequence identity

    1. AT5G49910.1 [+] show detail - chloroplast heat shock protein 70-2
      E-value: 0; Score: 999.99

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Gene3D no description 9.3e-48
    Gene3D no description 1.4e-26
    Gene3D no description 4.2e-76
    HMMPfam Heat shock protein 70 1.7e-263
    HMMPfam Glutamate dehydrogenase, NAD-specific 1e-24
    HMMPfam Glutamate dehydrogenase, NAD-specific 3.5e-24
    HMMPfam Glutamate dehydrogenase, NAD-specific 2.2e-34
    HMMPfam Glutamate dehydrogenase, NAD-specific 7e-33
    PatternScan Heat shock protein 70, conserved site 0
    PatternScan Heat shock protein 70, conserved site 0
    PatternScan Heat shock protein 70, conserved site 0
    HMMTigr Chaperone DnaK 0
    FPrintScan Heat shock protein Hsp70 2.2e-77
    FPrintScan Heat shock protein Hsp70 2.2e-77
    FPrintScan Heat shock protein Hsp70 2.2e-77
    FPrintScan Heat shock protein Hsp70 2.2e-77
    FPrintScan Heat shock protein Hsp70 2.2e-77
    FPrintScan Heat shock protein Hsp70 2.2e-77
    FPrintScan Heat shock protein Hsp70 2.2e-77
    FPrintScan Heat shock protein Hsp70 2.2e-77
    FPrintScan Heat shock protein Hsp70 2.2e-77
    HAMAP Chaperone DnaK 36.369
    HMMPanther HEAT SHOCK PROTEIN 70 (HSP70) 0
    HMMPanther Heat shock protein Hsp70 0
    superfamily Actin-like ATPase domain 1.6e-65
    superfamily Heat shock protein 70kD (HSP70), peptide-bind 9.4e-64
    superfamily Actin-like ATPase domain 3.3e-59
    superfamily Heat shock protein 70kD (HSP70), C-terminal s 7.3e-07

    See the detailed result >

    AT5G49910.1

    Model type
    Protein coding
    Short Description
    chloroplast heat shock protein 70-2
    Curator Summary
    Stromal heat shock protein involved in protein import into chloroplast.
    Computational Description
    chloroplast heat shock protein 70-2 (CPHSC70-2EAT SHOCK PROTEIN 70-2); FUNCTIONS IN: protein binding; INVOLVED IN: protein folding, response to cadmium ion, protein targeting to chloroplast, response to heat; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Chaperone DnaK (InterPro:IPR012725), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: chloroplast heat shock protein 70-1 (TAIR:AT4G24280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR