K25217

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25217

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • increased height (PATO:0000570)
    (Adult plant::Plant height::tall)
cauline leaf (PO:0000013)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • dark green (PATO:0001249)
    (Stem::Color::dark)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25217

Determination of introduced cDNA(s)

  • J033107J07 - Rice Full-length cDNAs - Original: J033107J07

    full reading [+] show sequence

    Nucleotide sequence: J033107J07 - full reading
    GTCCCGCCTG AATCCTTCTC CCTCGCCGGG TTAGGGTTTC CTCGCCTCGC 
    CATGGCCTCC TTCACCTCCC AGCTCGGCGC CATGGCGTGC GGCGCCGCCC
    CCTCCACCTC GCCCCTCGCG GCCCGGAGGA GCGGGCAGCT GTTCGTGGGG
    CGGAAGCCCG CGGCGGCGTC GGTGCAGATG CGGGTGCCGC GGGCGGGGCG
    GGCGCGGGGG GTGGCGATGC GGGTGGCGTG CGAGAAGGTG GTGGGGATCG
    ACCTCGGGAC GACCAACTCC GCGGTGGCGG CGATGGAGGG CGGGAAGCCG
    ACGGTCATCA CCAACGCCGA GGGCCAGCGG ACGACGCCCT CCGTGGTGGC
    GTACACCAAG GGCGGGGAGC GGCTGGTCGG GCAGATCGCC AAGCGGCAGG
    CCGTCGTCAA CCCGGAGAAC ACCTTCTTCT CCGTCAAGCG CTTCATCGGC
    CGCAAGATGG CCGAGGTCGA CGACGAGGCC AAGCAGGTCT CCTACCACGT
    CGTCCGCGAC GACAACGGCA ACGTCAAGCT CGACTGCCCC GCCATCGGCA
    AGCAGTTCGC CGCCGAGGAG ATTTCCGCGC AGGTCTTGAG GAAGTTGGTG
    GACGATGCAT CTAAGTTTTT GAATGACAAA ATTACCAAAG CAGTGGTTAC
    TGTTCCTGCA TACTTCAATG ACTCACAGAG GACAGCAACA AAAGATGCTG
    GACGTATTGC AGGATTGGAA GTTCTCCGCA TTATAAATGA GCCGACTGCT
    GCATCCCTTG CTTATGGTTT TGAGAAGAAA AACAACGAAA CGATTCTTGT
    GTTTGACTTG GGAGGCGGTA CCTTTGATGT CTCTGTATTG GAGGTTGGAG
    ATGGTGTGTT TGAGGTGCTT TCCACATCTG GTGACACACA CCTTGGTGGC
    GATGACTTCG ATAAGAAAGT TGTGGATTGG CTTGCTAGCA ACTTTAAGAA
    AGATGAAGGC ATTGATCTTC TGAAAGACAA ACAAGCCCTG CAGCGACTCA
    CTGAGGCAGC AGAGAAAGCG AAGATGGAAC TGTCTACGCT GTCTCAGACA
    AACATTAGCT TGCCTTTCAT AACTGCTACT GCTGATGGGC CTAAACACAT
    CGAGACAACT CTCTCCAGAG CCAAATTTGA GGAGCTATGT TCGGACCTCA
    TTGATAGGCT TAAAACTCCT GTCACTAATG CCTTGAGAGA TGCCAAACTG
    TCTGTTGATA ACCTGGACGA AGTGATTCTT GTTGGTGGAT CCACTCGTAT
    CCCTTCCGTG CAAGAGCTTG TGAAGAAGAT CACTGGCAAG GATCCCAATG
    TCACAGTCAA CCCTGATGAG GTTGTTTCTC TTGGGGCAGC TGTACAGGGT
    GGAGTTTTGG CCGGAGATGT GAAAGATGTC GTTCTTCTTG ATGTTACTCC
    ATTGTCTCTT GGTCTGGAGA CGTTGGGTGG AGTGATGACC AAGATTATTC
    CCAGAAACAC AACACTGCCC ACCTCAAAAT CAGAGGTATT CTCCACAGCT
    GCAGATGGAC AGACAAGTGT TGAGATAAAT GTTCTTCAGG GAGAGAGAGA
    GTTTGTCCGG GACAACAAGT CTCTTGGAAG CTTCCGCTTG GATGGAATCC
    CTCCTGCACC ACGTGGTGTT CCACAAATTG AAGTCAAGTT TGATATTGAT
    GCCAATGGTA TTCTCTCTGT TGCTGCTATT GATAAGGGTA CTGGGAAGAA
    ACAGGATATC ACCATCACCG GCGCTAGTAC ACTGCCAAAG GATGAGGTTG
    AGAGAATGGT GGAAGAGGCT GACAAGTTTG CTCAGGAGGA CAAAGAGAAA
    AGAGATGCCA TTGATACCAA AAACCAGGCA GACTCTGTGG TCTACCAGAC
    TGAGAAGCAA CTGAAGGAGC TAGGTGACAA GGTACCTGCA CCTGTGAAAG
    AGAGGGTGGA TGCAAAGCTC AACGAGCTCA AAGAGGCCAT TGCGGGTGGA
    TCAACACAGA GCATGAAGGA TGCCATGGCT GCTTTAAACG AGGAAGTTAT
    GCAGATCGGC CAGGCCATGT ACAACCAGCA GCCTAATGCT GGTGCTGCTG
    GACCTACTCC TGGTGCCGAT GCTGGACCGA CAAGCTCAGG CGGTAAGGGA
    CCGAATGATG GAGATGTTAT TGATGCGGAT TTCACTGACA GCAATTGATA
    GTTCTAGCGA TTGAAGATTA TTGATGGAAG GATGATCTGT GGTGGATGGC
    TGTGAGGGTC TGATGGGTGA TGGTATAGGA AGAAGGGAGT GAACAAATTG
    TTCTTTTTGT TTACTATGGA TCCCATGTTC AATAGGCTCT TTAGTTTGCA
    ATTTGATAGC GTAGGGTTTT GCCAACATTT TCCTGTGATG TTGAATGAAG
    GATTATAAAA AGTAGCCTTC AAAAAAAGAG GAGGCAAAGG TTTTGATCGA
    AGAAGTAGCT GATTGATATG ACCTTGTTCC TTGAAAATAA AAATATCATT
    AGTTCCCTGT GC

    Gene models with high sequence identity

    1. AT5G49910.1 [+] show detail - chloroplast heat shock protein 70-2
      E-value: 0; Score: 999.99

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Gene3D no description 9.3e-48
    Gene3D no description 1.4e-26
    Gene3D no description 4.2e-76
    HMMPfam Heat shock protein 70 1.7e-263
    HMMPfam Glutamate dehydrogenase, NAD-specific 1e-24
    HMMPfam Glutamate dehydrogenase, NAD-specific 3.5e-24
    HMMPfam Glutamate dehydrogenase, NAD-specific 2.2e-34
    HMMPfam Glutamate dehydrogenase, NAD-specific 7e-33
    PatternScan Heat shock protein 70, conserved site 0
    PatternScan Heat shock protein 70, conserved site 0
    PatternScan Heat shock protein 70, conserved site 0
    HMMTigr Chaperone DnaK 0
    FPrintScan Heat shock protein Hsp70 2.2e-77
    FPrintScan Heat shock protein Hsp70 2.2e-77
    FPrintScan Heat shock protein Hsp70 2.2e-77
    FPrintScan Heat shock protein Hsp70 2.2e-77
    FPrintScan Heat shock protein Hsp70 2.2e-77
    FPrintScan Heat shock protein Hsp70 2.2e-77
    FPrintScan Heat shock protein Hsp70 2.2e-77
    FPrintScan Heat shock protein Hsp70 2.2e-77
    FPrintScan Heat shock protein Hsp70 2.2e-77
    HAMAP Chaperone DnaK 36.369
    HMMPanther HEAT SHOCK PROTEIN 70 (HSP70) 0
    HMMPanther Heat shock protein Hsp70 0
    superfamily Actin-like ATPase domain 1.6e-65
    superfamily Heat shock protein 70kD (HSP70), peptide-bind 9.4e-64
    superfamily Actin-like ATPase domain 3.3e-59
    superfamily Heat shock protein 70kD (HSP70), C-terminal s 7.3e-07

    See the detailed result >

    AT5G49910.1

    Model type
    Protein coding
    Short Description
    chloroplast heat shock protein 70-2
    Curator Summary
    Stromal heat shock protein involved in protein import into chloroplast.
    Computational Description
    chloroplast heat shock protein 70-2 (CPHSC70-2EAT SHOCK PROTEIN 70-2); FUNCTIONS IN: protein binding; INVOLVED IN: protein folding, response to cadmium ion, protein targeting to chloroplast, response to heat; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Chaperone DnaK (InterPro:IPR012725), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: chloroplast heat shock protein 70-1 (TAIR:AT4G24280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR