K25221

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25221

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25221

Determination of introduced cDNA(s)

  • J033102H16 - Rice Full-length cDNAs - Original: J033102H16

    full reading [+] show sequence

    Nucleotide sequence: J033102H16 - full reading 
    GGGGGCGTCC AAATCCGCCG CCGAATTCCC CACCCGTCGC GTCCAAAATC 
    CAAATCCGCC GCCGCGATCG AGGCCGACGA GGAGAGGTTG AGGTTGAGGT 
    GAGAGCCATG GTGAGCGCCT TCTTCCTGCT GTGCGGGTGC GTGGACCAGG 
    CGAGCGTCGC GGTGGTGGAG AAGTGGGGCC GCTTCCTCCG CCTCGCCGAG 
    CCGGGCCTCC ACTTCTTCAA CCCGTTCGCC GGCGAGTTCG TCGCCGGGAC 
    GCTCTCCACC CGCGTCCAGT CGCTCGACGT CCGCGTCGAG ACCAAGACCA 
    AGGATAATGT CTTTGTTCAG CTTATCTGCA CAATCCAATA TCGGGTTGTT 
    AAGGAACATG CTGATGATGC ATTCTATGAG TTGCAGAATC CCCAACAGCA 
    AATTCAGGCC TACGTCTTTG ATGTGGTCCG AGCTATAGTT CCGAGAATGA 
    ATCTTGATGA TCTTTTTGAG CAAAAGAATG ATGTGGCGAA AGCTGTACTT 
    CAGGAGCTAG AAAAGGTGAT GGGAGATTAT GGTTACAGCA TTGAGCACAT 
    TCTCATGGTT GACATCATCC CTGATGCTGC TGTACGCAGA GCAATGAATG 
    AAATAAATGC AGCACAAAGG CTTCAGCTTG CAAGTGTCTA CAAAGGAGAG 
    GCGGAGAAGA TTCTTCTGGT GAAGAAAGCA GAAGCAGAGG CAGAGGCAAA 
    ACACCTTTCC GGTGTCGGCA TTGCTAGACA GCGGCAGGCG ATAACTGATG 
    GCCTGAGAGA GAACATCCTG AACTTCTCGC ACTCGGTTTC AGGCACCTCA 
    GCAAAAGAAG TCATGGATCT CATCATGGTC ACGCAGTACT TCGACACCAT 
    CAAAGAACTT GGGGATGGCT CGAAGAACAC CACGGTGTTC ATACCTCATG 
    GCCCAGGCCA TGTCAGGGAT ATCAGCGAGC AAATCCGGAA TGGTATGATG 
    GAAGCGTCCT GCAGCAACGT GTAAATCGGT ATCGAATGCG GAACCAAGGT 
    TGGGGGTGGT TCAGATGGGA GGTCCTGTTT ATAGTGAATA GTACGAATGA 
    ATGCTAGTAG CATGTGTTGT TTGCACGCGC GCCCTGGAGT TGTATGCAGT 
    GGTAGATAGA GTTCGAGTTT TGGCATAATA ATATTGTCTG AATTTTATGT 
    AAAAGAAAAT CACATGTCTT CCTTTTGTGA GTTAAAAGTT GCACCGATTT 
    ATGCATGGC

    Gene models with high sequence identity

    1. AT5G51570.1 [+] show detail - SPFH/Band 7/PHB domain-containing membrane-associated protein family
      E-value: 4e-120; Score: 428.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Band 7 protein 1.3e-29
    HMMSmart Band 7 protein 3.6e-25
    HMMPanther STOMATIN-RELATED 1e-74

    See the detailed result >

    AT5G51570.1

    Model type
    Protein coding
    Short Description
    SPFH/Band 7/PHB domain-containing membrane-associated protein family
    Computational Description
    SPFH/Band 7/PHB domain-containing membrane-associated protein family; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: SPFH/Band 7/PHB domain-containing membrane-associated protein family (TAIR:AT5G62740.1); Has 5870 Blast hits to 5870 proteins in 1885 species: Archae - 189; Bacteria - 4209; Metazoa - 145; Fungi - 209; Plants - 268; Viruses - 20; Other Eukaryotes - 830 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR