K25241

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25241

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25241

Determination of introduced cDNA(s)

  • J013090D23 - Rice Full-length cDNAs - Original: J013090D23

    full reading [+] show sequence

    Nucleotide sequence: J013090D23 - full reading 
    GGCGGCCTCC ATTTTCGGCG CTCTGCTCTC TCCTTTGCGT CGGATTCAAG 
    TAAGGCTTGT TGAGTTCGGT GCCCCATATC CCTCAATCTC GGGTGCGATT 
    CGATCGGGTT TGCTTCGAAT TCGTCGTTCG ATTGAGAATG TCAAGCCTCG 
    AGGAGCCACT TGGTCTTGGG GACCTGCCAA AGTTGAGTAT TAACAGACTT 
    GAAAGGTTCT CTCCAAGTGC CTGCAGAGCA AGTGTTGATG ACAGCAACAC 
    CAACAATTAC AAGCATCGCA ATGGTGGCAA CAATCAGACG ATCTTTCACA 
    GCAGTGCTCA TTCATGGCAT ATGCAAGGCC AATATACTGA TTCATCCTGC 
    AATGGGGTGG ATATGGAGTT CAGAGCTCTT CCACGGAAGG TTTCATCAGA 
    CCACCTCAAA TAGAAGGAAT GAACTCACAT GTAGCATTAT GACTGTGGCA 
    ATGCAACATG TTTTATGGGA CCTTCCAAGG TTTGTGAAGA TAGTTGAAGT 
    TGGACCACGG GACGGTCTGC AAAATGAGAA GAATACTGTA CCCACATCTG 
    TAAAGATTGA ACTGATACAC AAATTGGTGG CTTCTGGTCT ATCAGTAGTT 
    GAAGCCACAA GTTTTGTGTC CCCAAAATGG GTGCCACAGC TAGCAGATGC 
    AAAGGATGTG GTTGAAGGGA TTAAGCATGT GCCAGATGTG CGGTTTCCAG 
    TGTTAACTCC TAACCTCAGA GGATTTGAGG CTGCTGTTGC AGCTGGTGCA 
    AAAGAAGTTG CAGTTTTCGC ATCTGCCTCT GAATCCTTTT CTAAGTCAAA 
    CCTTAATTGT ACCATCAAGG AAAGCCTTGT TCGGTACCAT GATGTTGTAA 
    CTTCTGCCAA GAAACATGGA ATACGAATCC GTGGGTATGT TTCATGTGTG 
    GTTGGTTGCC CTGTTGAAGG CACAATTCAT CCATCAAAGG TAGCATATGT 
    AGCTAAGGAG CTTTATGACA TGGGTTGCTC GGAGATCTCA CTCGGAGACA 
    CGATTGGTGT TGGTACACCA GGTAGCGTAC TTGCTATGCT TGAAGCTGTA 
    ATGTCTTTTG TTCCAGTGGA CAAGATCGCC GTCCATTTCC ATGACACATA 
    CGGCCAAGCC CTTGCCAACA TACTGGTCTC TCTCCAACTG GGGATCAACA 
    TAGTGGACTC ATCAGTGTCA GGACTGGGAG GCTGCCCATA TGCAAAGGGC 
    GCCACCGGCA ATGTCGCGAC GGAGGACGTT GTGTACATGC TCCATGGACT 
    GGGGATAGAG ACCAATGTTG ACCTCAACAA GCTCATGGAT GCTGGAGATT 
    ACATCTCCAA GCATCTGGGA AGGCAGTCAG GCTCCAAGAC CACCACTGCT 
    CTCCGCAAGC TAACCACTTA AGTCCCTGAT GATCATAATA GGGATTCAGA 
    AAAGAAGTCC GAAGATACAT CGGTTGGCGT CAGTTTAATG TTTTTACACA 
    AGTCATATGT GATTGTAACC TGTAAACCGT CTCAATTTAG TCCCAATATG 
    GGTGAAAGTA AACAGAAACC ATATATGTAT AGACACATTT GTGTTTAAGT 
    TCTTGGATTG AATAATCAAT GCCCTTCAT

    Gene models with high sequence identity

    1. AT2G26800.2 [+] show detail - Aldolase superfamily protein
      E-value: 5e-116; Score: 415.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther HYDROXYMETHYLGLUTARYL-COA LYASE 1.3e-113
    HMMPanther ISOPROPYLMALATE SYNTHASE RELATED 1.3e-113
    HMMPfam Pyruvate carboxyltransferase 1.2e-56
    superfamily Aldolase 3.6e-81
    ProfileScan Pyruvate carboxyltransferase 36.901
    Gene3D Aldolase-type TIM barrel 1.1e-67

    See the detailed result >

    AT2G26800.2

    Model type
    Protein coding
    Short Description
    Aldolase superfamily protein
    Computational Description
    Aldolase superfamily protein; FUNCTIONS IN: hydroxymethylglutaryl-CoA lyase activity, catalytic activity; INVOLVED IN: leucine metabolic process, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Pyruvate carboxyltransferase (InterPro:IPR000891); BEST Arabidopsis thaliana protein match is: 2-isopropylmalate synthase 2 (TAIR:AT5G23020.1); Has 10793 Blast hits to 10779 proteins in 2209 species: Archae - 423; Bacteria - 7034; Metazoa - 235; Fungi - 307; Plants - 196; Viruses - 0; Other Eukaryotes - 2598 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR