K25306

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25306

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25306

Determination of introduced cDNA(s)

  • J033143D23 - Rice Full-length cDNAs - Original: J033143D23

    full reading [+] show sequence

    Nucleotide sequence: J033143D23 - full reading 
    GTATGATGCT AACCGGAAGC TCACGGCTTA TACAGGAGCA ACTTCCCCCA 
    AAACTCTTGC CAGTTCGCGC GGCTTCAGGC TTTCTTTGGC GCCAAATCCG 
    CCGCCCAATC CCAGTTTTCC CAAGGGTAGT TTCTTGGTTT AGTCAACTAC 
    TATGGGGTCC TGTGTGGGAA AGGAACGCAG TGATGAAGAA GACAAGATTG 
    ACTTCAAAGG TGGCAATGTG CATGTGATTA GTAACAAAGA GAATTGGGAC 
    CACAAAATTG CAGAGGCAAA CAAGGATGGG AAAATTGTGA TTGCAAATTT 
    CAGTGCTGCA TGGTGTGGAC CATGCCGTGT CATTGCACCT GTATATGCTG 
    AGATGTCACA GACATACCCC CAGTTCATGT TCTTGACTAT AGATGTCGAC 
    GAGTTAATGG ACTTCAGCTC ATCATGGGAC ATCCGAGCGA CACCGACGTT 
    CTTCTTCCTA AAGAACGGGG AGCAGGTGGA CAAGCTCGTC GGCGCCAACA 
    AGCCGGAGCT GGAGAAGAAA GTGGCCGCGC TTGCTGACAG CGCCTGAGGC 
    AAATTAAGCC AGTGACAATC AGACATTATT GTCAGGAACC CCAAAGTTCA 
    GTTCAGAGTT CAGACGTTGC CAGCAAATAT CAATTATCAT CAGAGGCTGT 
    ATGTTCTGCT GAGGTGTTTC TTCAGACTTG GTTCTGTATA TCCGTCATGA 
    GACTGTACAG TCCCCGGGTA TAAAGTATCT TTTTTTCTCC TGTTAAAATC 
    ACACTTTTGA CATGCCATTT TGGCACTATT ATTGCCTGAT TTTACCCTGG 
    TGATTAGTGA TCCGATGTAT GTTGAGTGTG AACTGATACA GAACAATAGG 
    GAAATATTTT TACTGTAATA TTGACAAATG CCAGGAATGG CTACCAATCT 
    GCCATGAATC CATGATTTAT GGAGTTCATG ATTCTAGT

    Gene models with high sequence identity

    1. AT3G08710.2 [+] show detail - thioredoxin H-type 9
      E-value: 2e-49; Score: 192.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther THIOREDOXIN H-TYPE-RELATED 1.6e-49
    HMMPanther Thioredoxin, core 1.6e-49
    PatternScan Thioredoxin, conserved site 0
    FPrintScan Thioredoxin-like subdomain 1.6e-05
    FPrintScan Thioredoxin-like subdomain 1.6e-05
    FPrintScan Thioredoxin-like subdomain 1.6e-05
    Gene3D Thioredoxin fold 1.1e-30
    ProfileScan Thioredoxin-like 12.019
    HMMPfam Thioredoxin domain 4.6e-26
    superfamily Thioredoxin-like fold 4.4e-31

    See the detailed result >

    AT3G08710.2

    Model type
    Protein coding
    Short Description
    thioredoxin H-type 9
    Curator Summary
    Associated to plasma membrane. Moves cell to cell, suggesting a role in intercellular communication.
    Computational Description
    thioredoxin H-type 9 (TH9); INVOLVED IN: cell communication; LOCATED IN: cytosol, nucleus, plasma membrane, plastid; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT3G56420.1); Has 16223 Blast hits to 16135 proteins in 2903 species: Archae - 224; Bacteria - 9339; Metazoa - 1540; Fungi - 676; Plants - 1413; Viruses - 3; Other Eukaryotes - 3028 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR