K25308

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25308

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25308

Determination of introduced cDNA(s)

  • J033096N05 - Rice Full-length cDNAs - Original: J033096N05

    full reading [+] show sequence

    Nucleotide sequence: J033096N05 - full reading
    GGTCTTTCCC ATCTCGCGGC GGCTGCGTCT CTCTCTCGAT CTCTCGGCGG 
    CGGCCATGGC GGACTACCAC TTCGTGTACA AGGACGTGGA GGGGGCGAGC
    ACGGAGTGGG ACGACATCCA GCGACGCCTG GGGAACCTGC CGCCGAAGCC
    GGAGCCGTTC AAGCCGCCGG CGTACGCGCC CAAGGTCGAC GCCGACGAGC
    AGCCCAAGTC CAAGGAATGG CTCGACGAGC GGGAGCCCGA CGAGCTGGAG
    GATCTCGAGG ACGACCTCGA CGACGACCGC TTCCTCGAGC AGTATAGGAG
    GATGAGGCTT GCAGAGCTCA GGGAGGCAGC AAAGGCCGCG AAATTCGGCT
    CTATTGTGCC TATCACTGGC TCTGATTTTG TCCGAGAGGT CTCCCAGGCC
    CCATCCGATG TCTGGGTTGT GGTCTTCCTC TACAAGGATG GAATACCAGA
    ATGTGGGTTG CTTCAGACTT GTCTGGATGA ATTGGCTACA AGATACCCAG
    CAACTAAGTT TGTTAAAATC ATCTCTACAG ACTGCATTCC CAACTACCCA
    GATCGAAATG TCCCTACTAT ACTTGTGTAC AATAACAGTG CTGTTAAAGG
    GACTTATGTC GGTCTGCAGA AGTTTGGTGG AAAAAGATGC ACACCTGAGT
    CTGTTGCATT GGCCCTTTGC CAGTCAGAGC CAGTCCTGAA TGATGGGCAG
    AGCGGCGGTG ATTCATCCCG GGACAATGTC ATAGAAGGCG TTCGCAGGAA
    GTTCATCGAA AAGGTTGTCG CCCAGCATGA AGAGCGGGAG GAAGATGACG
    ATAGTGACTA AACATACTCT CCTAGTATGT CTCAGTTCAC TGATACTATT
    GATGATGTGG GTCAAGTTTT GCCTGAGATC ACTAATTGTA CTCATATTTG
    GTTCTGTTCT GAAAATGCTG AATTTTCTCT CTACGATGAG CTGCAAAAAC
    TCAGGTTTAG CAGCAGCTTG TTGTGGTACA TGTGGTAAAT TGGTAATGTA
    TCCTGGTGTT CCTTGTATTG ATTGTGGCAC TTTCAGCTAA AATGAAAATG
    GATAAATTTC ATG

    Gene models with high sequence identity

    1. AT5G14240.1 [+] show detail - Thioredoxin superfamily protein
      E-value: 3e-68; Score: 255.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Thioredoxin-like fold 6.3e-42
    HMMPfam Phosducin 1e-15
    HMMPanther PHOSDUCIN-LIKE PROTEIN 2, 3 (VIRAL IAP-ASSOCI 1.6e-87
    HMMPanther PHOSDUCIN-RELATED 1.6e-87
    Gene3D Thioredoxin fold 2.9e-32

    See the detailed result >

    AT5G14240.1

    Model type
    Protein coding
    Short Description
    Thioredoxin superfamily protein
    Computational Description
    Thioredoxin superfamily protein; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); Has 1075 Blast hits to 1075 proteins in 388 species: Archae - 0; Bacteria - 2; Metazoa - 646; Fungi - 206; Plants - 103; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR