K25308

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25308

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25308

Determination of introduced cDNA(s)

  • J033096N05 - Rice Full-length cDNAs - Original: J033096N05

    full reading [+] show sequence

    Nucleotide sequence: J033096N05 - full reading 
    GGTCTTTCCC ATCTCGCGGC GGCTGCGTCT CTCTCTCGAT CTCTCGGCGG 
    CGGCCATGGC GGACTACCAC TTCGTGTACA AGGACGTGGA GGGGGCGAGC 
    ACGGAGTGGG ACGACATCCA GCGACGCCTG GGGAACCTGC CGCCGAAGCC 
    GGAGCCGTTC AAGCCGCCGG CGTACGCGCC CAAGGTCGAC GCCGACGAGC 
    AGCCCAAGTC CAAGGAATGG CTCGACGAGC GGGAGCCCGA CGAGCTGGAG 
    GATCTCGAGG ACGACCTCGA CGACGACCGC TTCCTCGAGC AGTATAGGAG 
    GATGAGGCTT GCAGAGCTCA GGGAGGCAGC AAAGGCCGCG AAATTCGGCT 
    CTATTGTGCC TATCACTGGC TCTGATTTTG TCCGAGAGGT CTCCCAGGCC 
    CCATCCGATG TCTGGGTTGT GGTCTTCCTC TACAAGGATG GAATACCAGA 
    ATGTGGGTTG CTTCAGACTT GTCTGGATGA ATTGGCTACA AGATACCCAG 
    CAACTAAGTT TGTTAAAATC ATCTCTACAG ACTGCATTCC CAACTACCCA 
    GATCGAAATG TCCCTACTAT ACTTGTGTAC AATAACAGTG CTGTTAAAGG 
    GACTTATGTC GGTCTGCAGA AGTTTGGTGG AAAAAGATGC ACACCTGAGT 
    CTGTTGCATT GGCCCTTTGC CAGTCAGAGC CAGTCCTGAA TGATGGGCAG 
    AGCGGCGGTG ATTCATCCCG GGACAATGTC ATAGAAGGCG TTCGCAGGAA 
    GTTCATCGAA AAGGTTGTCG CCCAGCATGA AGAGCGGGAG GAAGATGACG 
    ATAGTGACTA AACATACTCT CCTAGTATGT CTCAGTTCAC TGATACTATT 
    GATGATGTGG GTCAAGTTTT GCCTGAGATC ACTAATTGTA CTCATATTTG 
    GTTCTGTTCT GAAAATGCTG AATTTTCTCT CTACGATGAG CTGCAAAAAC 
    TCAGGTTTAG CAGCAGCTTG TTGTGGTACA TGTGGTAAAT TGGTAATGTA 
    TCCTGGTGTT CCTTGTATTG ATTGTGGCAC TTTCAGCTAA AATGAAAATG 
    GATAAATTTC ATG

    Gene models with high sequence identity

    1. AT5G14240.1 [+] show detail - Thioredoxin superfamily protein
      E-value: 3e-68; Score: 255.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Thioredoxin-like fold 6.3e-42
    HMMPfam Phosducin 1e-15
    HMMPanther PHOSDUCIN-LIKE PROTEIN 2, 3 (VIRAL IAP-ASSOCI 1.6e-87
    HMMPanther PHOSDUCIN-RELATED 1.6e-87
    Gene3D Thioredoxin fold 2.9e-32

    See the detailed result >

    AT5G14240.1

    Model type
    Protein coding
    Short Description
    Thioredoxin superfamily protein
    Computational Description
    Thioredoxin superfamily protein; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); Has 1075 Blast hits to 1075 proteins in 388 species: Archae - 0; Bacteria - 2; Metazoa - 646; Fungi - 206; Plants - 103; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR