K25315

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25315

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25315

Determination of introduced cDNA(s)

  • J023077J08 - Rice Full-length cDNAs - Original: J023077J08

    full reading [+] show sequence

    Nucleotide sequence: J023077J08 - full reading
    GTTATCCATT TGTTCCAGGC TCGAGCACTC CGTTCTCCCG GGTCTCCGGT 
    GCTGCTCCCG CCGCAGCCGG ACACCCGAAC GCGAAGCTCC AACTCTCCAA
    TGCTCCCCTC GTCTCGTTAC CTCCTCGCCC CGGCCCCACT TCCCGCCATG
    GTGGTACGGC CACCGCCGCC GCATCCACCG AGCCGCGGAA CTTCCCCTCT
    CGCTCGGCCA CCATTGTGCC GCGCCATGGC GCGGGCCGCC CCCTCGCTCT
    CTGCCGCGGC CTCGACGGCT GCCTCCTCCT CGACGACTCC TGCCAAGAAG
    AAGGTTCTCT TGCCCATCGC CATGGGCACG GAGGAGATGG AGGCAGTCAT
    CCTTGCCGGT GTACTCCGCC GAGCCGGCGC CGACGTGACG CTGGCATCCG
    TGGAGGACGG CCTCGAGGTG GAGGCCTCGC GTGGCTCCCA CATCGTTGCT
    GACAAGCGCA TTGCCGCTTG TGCAGACCAG GTGTTCGACC TCGTGGCTCT
    CCCGTTGACA AAGGTTGACG ATAATCTTGA AAGAAGTATT GAAGTCAACG
    AAATTGAGTG GTCTTCTGAT CACAATCCTC ATGTTCTCAT TCCAATTGCA
    AATGGTTCAG AAGAGATGGA GATAATAATG TTGACGGATG TTTTACGGCG
    AGCAAATGTA AATGTGGTGT TGGCATCAGT TGAAAAATCA ACAAGTATTG
    TCGGGTCCCA AAGGATGAGG ATTGTTGCTG ATAAATGCAT TTCAGATGCT
    TCTGCCTTAG AATATGATCT AATTATCCTT CCTGTGAGCT ATTTCTCATT
    TCATATTTTC ATTTAGATAT CATAAATGCC GACATATAAG TTCATTGTTG
    TTCCTACAAG ATATTTTGCA TATAGCTGGT TCATGGACTG GTACAAATCC
    CCATCTTATC ATCATCATGA TGCTTGCTTT TAACCTTATC TTGAATGTAG
    CTGCATATTA CTG

    Gene models with high sequence identity

    1. AT4G34020.1 [+] show detail - Class I glutamine amidotransferase-like superfamily protein
      E-value: 8e-20; Score: 94.70

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 0.0000000032
    Gene3D no description 0.00000000073
    HMMPanther THIJ-RELATED 2.6e-27
    HMMPanther THIJ/PFPI 2.6e-27
    superfamily Class I glutamine amidotransferase-like 0.00000000000028
    superfamily Class I glutamine amidotransferase-like 0.000000000031

    See the detailed result >

    AT4G34020.1

    Model type
    Protein coding
    Short Description
    Class I glutamine amidotransferase-like superfamily protein
    Computational Description
    Class I glutamine amidotransferase-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DJ-1 (InterPro:IPR006287), ThiJ/PfpI (InterPro:IPR002818); BEST Arabidopsis thaliana protein match is: Class I glutamine amidotransferase-like superfamily protein (TAIR:AT1G53280.1); Has 6311 Blast hits to 3877 proteins in 1442 species: Archae - 143; Bacteria - 5053; Metazoa - 521; Fungi - 51; Plants - 234; Viruses - 0; Other Eukaryotes - 309 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR