K25315

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25315

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25315

Determination of introduced cDNA(s)

  • J023077J08 - Rice Full-length cDNAs - Original: J023077J08

    full reading [+] show sequence

    Nucleotide sequence: J023077J08 - full reading 
    GTTATCCATT TGTTCCAGGC TCGAGCACTC CGTTCTCCCG GGTCTCCGGT 
    GCTGCTCCCG CCGCAGCCGG ACACCCGAAC GCGAAGCTCC AACTCTCCAA 
    TGCTCCCCTC GTCTCGTTAC CTCCTCGCCC CGGCCCCACT TCCCGCCATG 
    GTGGTACGGC CACCGCCGCC GCATCCACCG AGCCGCGGAA CTTCCCCTCT 
    CGCTCGGCCA CCATTGTGCC GCGCCATGGC GCGGGCCGCC CCCTCGCTCT 
    CTGCCGCGGC CTCGACGGCT GCCTCCTCCT CGACGACTCC TGCCAAGAAG 
    AAGGTTCTCT TGCCCATCGC CATGGGCACG GAGGAGATGG AGGCAGTCAT 
    CCTTGCCGGT GTACTCCGCC GAGCCGGCGC CGACGTGACG CTGGCATCCG 
    TGGAGGACGG CCTCGAGGTG GAGGCCTCGC GTGGCTCCCA CATCGTTGCT 
    GACAAGCGCA TTGCCGCTTG TGCAGACCAG GTGTTCGACC TCGTGGCTCT 
    CCCGTTGACA AAGGTTGACG ATAATCTTGA AAGAAGTATT GAAGTCAACG 
    AAATTGAGTG GTCTTCTGAT CACAATCCTC ATGTTCTCAT TCCAATTGCA 
    AATGGTTCAG AAGAGATGGA GATAATAATG TTGACGGATG TTTTACGGCG 
    AGCAAATGTA AATGTGGTGT TGGCATCAGT TGAAAAATCA ACAAGTATTG 
    TCGGGTCCCA AAGGATGAGG ATTGTTGCTG ATAAATGCAT TTCAGATGCT 
    TCTGCCTTAG AATATGATCT AATTATCCTT CCTGTGAGCT ATTTCTCATT 
    TCATATTTTC ATTTAGATAT CATAAATGCC GACATATAAG TTCATTGTTG 
    TTCCTACAAG ATATTTTGCA TATAGCTGGT TCATGGACTG GTACAAATCC 
    CCATCTTATC ATCATCATGA TGCTTGCTTT TAACCTTATC TTGAATGTAG 
    CTGCATATTA CTG

    Gene models with high sequence identity

    1. AT4G34020.1 [+] show detail - Class I glutamine amidotransferase-like superfamily protein
      E-value: 8e-20; Score: 94.70

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 3.2e-09
    Gene3D no description 7.3e-10
    HMMPanther THIJ-RELATED 2.6e-27
    HMMPanther THIJ/PFPI 2.6e-27
    superfamily Class I glutamine amidotransferase-like 2.8e-13
    superfamily Class I glutamine amidotransferase-like 3.1e-11

    See the detailed result >

    AT4G34020.1

    Model type
    Protein coding
    Short Description
    Class I glutamine amidotransferase-like superfamily protein
    Computational Description
    Class I glutamine amidotransferase-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DJ-1 (InterPro:IPR006287), ThiJ/PfpI (InterPro:IPR002818); BEST Arabidopsis thaliana protein match is: Class I glutamine amidotransferase-like superfamily protein (TAIR:AT1G53280.1); Has 6311 Blast hits to 3877 proteins in 1442 species: Archae - 143; Bacteria - 5053; Metazoa - 521; Fungi - 51; Plants - 234; Viruses - 0; Other Eukaryotes - 309 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR