K25412

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25412

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25412

Determination of introduced cDNA(s)

  • J023142J09 - Rice Full-length cDNAs - Original: J023142J09

    full reading [+] show sequence

    Nucleotide sequence: J023142J09 - full reading 
    GAGCCTTAAA CCCTAGCTCC GCCTCCCACC TCCCTTTTCT TTTCTAGGGT 
    TCTTCCGCCG CCGCCGCCGC CGCCGCCGAT TCCGATGGAG TTCTGGGGTC 
    TTGAAGTCAA GCCTGGACAG ACTGTCAAAT GTGAGCCTGA AGATGAACGC 
    TTTTTGCACC TTTCTCAGGC TGCTCTTGGG GAATCAAAGA AAGGATCTGA 
    CAATGCAGTA ATGTATGTTA AAACTGATGA TCAAAAGCTA GTCATTGGAA 
    CCCTCTCAGC TGACAAGTTC CCTCAAATCC AGTTTGATTT GGTCTTTGAC 
    AAAGAGTTTG AGCTGTCACA CACTTCAAAG ACTGCTAGTG TGTTCTTTTC 
    TGGCTACAAA GTTTCCCAGC CGGCTGAGGA AGATGAAATG GATTTTGATT 
    CTGAAGAAGT TGAAGATGAA GAGGAGGAAG AAAAGATCAT TCCAGCTCCC 
    AGGGCAAATG GCAAAGTTGA AGGGAAGGAA AATGAGCAGA AAAAACAAGG 
    CAAGACAGAT TCTTCAGCTT CAAAATCAAA GGCTGCAGTG AATGACGATG 
    ATGATGATGA TGACAGTGAT GAGGATGATT CTGAGGACGA AGATCTTTCT 
    CCTGAGGATG ATGATGATGA TTCTTCTGAG GATGATTCCA GCGAAGATGA 
    TGAGGATGAG AGTGACGAGG AAGATACTCC CAAGAAGCCA GAGACTGGAA 
    AGAGGAAAGT AGCTGAAATT GTGTTGAAGA CACCTTCGTC TGATAAGAAA 
    GCAAAGATTG CTACACCGTC AGGCCAGAAG ACAGGTGACA AGAAGGGTGT 
    CCATGTAGCA ACTCCACATC CGGCAAAGCA GGCTAGCAAG ACCCCCGTGA 
    ATGACAAGTC AAAGGAGAAG TCCCCAAAAT CCGGTGGTGG GTCAATTTCT 
    TGCAAGTCAT GCAGCAAGAC GTTCAACAGT GAAATGGCTC TGCAATCTCA 
    CTCGAAGGCC AAGCACCCCG CCAAGTGAAG AATGAGACAA CGGATGCTGA 
    GCTGAGAAAT ATTGGTGTCG TTTGAGTTGG TTATCTGAAA TGAAATGAAA 
    TGCTGCAAAC TATTTGGTGT TATGAGTAGT GTCGTGACGG TTTATGTGGT 
    GCAAACTATT TAGTCTAGAA AAAAAAAATC TGTGGTGCGA ACTGAGCTAC 
    AATTTTATTC GGTCAAGGTC AGTGGAGTGA TTGGTTTATT TTGGATGGAA 
    TTATTGTTCT TCCCTGTTAT TCGGTTAATT CCCACGAGAA AGGATTGATA 
    ACACCACACT GAATTGACTA GCTGAACAAA GTCG

    Gene models with high sequence identity

    1. AT5G22650.2 [+] show detail - histone deacetylase 2B
      E-value: 1e-22; Score: 104.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Zinc finger, C2H2-type 0
    ProfileScan Zinc finger, C2H2-type 10.408

    See the detailed result >

    AT5G22650.2

    Model type
    Protein coding
    Short Description
    histone deacetylase 2B
    Curator Summary
    Encodes a member of a plant-specific class of histone deacetylases. Controls the development of adaxial/abaxial leaf polarity. Its mRNA is widely expressed in stems, leaves, flowers and young siliques. Plant lines expressing RNAi constructs directed against this gene showed a marked reduction in agrobacterium-mediated root transformation.
    Computational Description
    histone deacetylase 2B (HD2B); FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: DNA mediated transformation, negative regulation of transcription, polarity specification of adaxial/abaxial axis; LOCATED IN: cytosol, nucleolus, cell wall, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: histone deacetylase 3 (TAIR:AT3G44750.2); Has 64884 Blast hits to 33590 proteins in 1781 species: Archae - 205; Bacteria - 13636; Metazoa - 21760; Fungi - 9071; Plants - 3171; Viruses - 807; Other Eukaryotes - 16234 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR