K25413

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25413

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25413

Determination of introduced cDNA(s)

  • J013002O12 - Rice Full-length cDNAs - Original: J013002O12

    full reading [+] show sequence

    Nucleotide sequence: J013002O12 - full reading
    GTATTCCATG ACCTCCCCTC CGAGTCGCGC ACCGCGCTCT CCTACACCTC 
    CCTCATCGCC GCCTACGCGC GCAACGCGCT GCACGAGGAG GCCCGCGAGC
    TGCTCGACCA GATGAAGGCC TCCGGCGTCG TGCCCACCGA TCCGCCGGTC
    CCGTTCGACA TGCTGCTCGG CCTCTTCGCT GAAATGCGCC ATGACCCTTC
    CCCCTCCGTT CGTCCCGACT TCACCACCTA CAACACCCTC CTCGCCGCTG
    CCGCTGTACG CGCTCTCTCC GACCAGTCCG AGATGCTGCT GCGCACCATG
    CTCGAGGCCG GTGTCTTGCC GGACACCGCA TCTTACCGCC ACATTGTTGA
    TGCCTTCGCT GGTGCTGGTA ACCTCTCCCG TGTGGCCGAG CTGTTTGCCG
    AGATGTCAGC AACGGGGCAC ACTCCAGACC CATCTGCGTA TCTTGGGCTG
    ATGGAAGCTC ACACGCTGGT TGGTGCCACT GCTGAAGCGG TAGCTGTGCT
    GCGGCAGATG CAGGCTGATG GCTGTCCGCC GACAGCTGCG ACATACCGTG
    TCTTGCTTGA TCTGTATGGC AGACAGGGGA GGTTTGATGG CGTGCGCGAG
    CTCTTCCGCG AGATGAGAAC AACTGTACCT CCAGACACAG CCACATACAA
    TGTCCTGTTC CGCGTTTTTG GGGACGGTGG CTTCTTCAAG GAGGTGGTGG
    AGCTCTTCCA AGATATGCTT CACTCTGAAG TAGAGCCTGA TATTGATACA
    TGTGAAAACG TCATGGTTGC GTGTGGTCGT GGTGGACTCC ATGAGGATGC
    AAGGGAAGTT CTTGACTATA TCACAACAGA AGGAATGGTG CCTACTGCAA
    AGGCCTACAC TGGCCTAGTT GAAGCGCTTG GCCATGCAGC TATGTATGAG
    GAGGCTTATG TTGCATTCAA CATGATGACT GAAATTGGAA GCTTGCCAAC
    TATAGAGACC TACAATGCTC TTGCAAATGC ATTTGCAAAG GGTGGCCTTT
    TCCAGGAGGC TGAGGCCATC TTTTCTCGAA TGACCAACAA TGCTGCTATT
    CAGAAAGACA AGGATTCATT CGATGCTCTC ATTGAAGCGT ATTGCCAGGG
    TGCACAGTTA GATGATGCAG TTAAGGCATA CATGGAGATA CGGAAGTCCA
    GGTTTAATCC AGATGAACGC TCCCTTGAGG GGGTACTCAA TGCCTACTGC
    ATAGCAGGTG TTATAGATGA GAGCAAAGAG CAGTTTGAAG AACTTCAGTC
    CATGGTGACT GTTCCTAGCA TTATTGCTTA TTGCATGATG TTGTCACTCT
    ATGCCAGGAA TGACAGGTGG ACAGATGCTT ATGATCTGTT GGAAGAAATG
    AAAACAAACC GTGCTAGTAG TACACATCAA GTGATTGCTT CCATGATCAA
    AGGGGAGTAT GACGATGACT CCAATTGGCA AATGGTCGAA TATGTTCTTG
    ACAACAGTAA CTTGGAAGGC TGTGACTACA GTTTACGATT CTTTAATGCA
    CTCCTTGATG TCCTTTGGTG GTTTGGCCAG AAGGGTCGAG CTGCAAGGGT
    TTTGGATCAA GCATTAAAAT ATGGGCTCTT CCCTGAGTTA TTTCGTGATA
    CCAAGCTGGT CTGGTCTGCA GATGTGCATA GGATGTCAGT AGGTGGATCA
    TTAGTGGCTG TGTCAGTGTG GCTCAATAAA CTTTATGATA GACTAAAAGG
    CGATGAAGAT CTTCCTCAGT TAGCCTCAGT TGTTGTATTG AGGGGACAAA
    TGAAGAAAAG CACAGTTACA AGGGGATTGC CGATTGCAAA AGTTGTGTAC
    TCTTTTCTGA ATGATACACT ATCATCATCC TTCCATTATC CAAAATGGAA
    CAAGGGACGA ATCATATGTT TGAAGTCCCA GTTGAAAAAG CTCCAGGCAG
    CCATAGATTC TTCCAATGGT GCTGCAATTT CTGGTTTTGT TCCCATGACA
    AACTCTCATT TGCCATCCCC TGGTTCCAAA TTGTACACTA GGGAGTCCCA
    AGCTGATAAT GGTTCTGCCC ATTTGACTGA TGAAACCTTG GTAGAAGAAA
    AGGAATCAGA ACTCCTTGCA CTGTGAGTTT TCAGGAGCTT GCTGCCTCCT
    TCCTTTTGCA GATGCGATGT TATCTGGCCG AACAAGGGAA GATAAGACAC
    AGAATGTCTC ACAATTTTGA AGTTTGGGCA ATCAGATCGT CCTAATGTGC
    AATGAGATGG CCTTATGCCT TTGCAGTGCT CTCTTGCTTC ACTATATGCA
    GTGGACGTGA CTCCCAATAT CCACAATCTT GCCTAGAACC CAGCACATAA
    GCATGAGTTC GTGATACTGG ATTTGCGCTA ACTTGATAGA CAATGCTGGA
    CTTCCAGTTG TGTTTCAGGA TGTAGCACTT AGTAGGGAGA ATCAGAGTAT
    GCATGTTGTT GTTAGTTGCT CACTTGTTCT ATATGACATT TCGTGCCTGC
    CCCATTCGGC AAGAACGAAC CCTGTCTGGA ATATATGGAT TCACTCGATG
    CAAGTAAAAC ATGCTGATGA GTCAGTGGAA CACATCAGTC ATCGATACGT
    TTCTGATGG

    Gene models with high sequence identity

    1. AT1G74850.1 [+] show detail - plastid transcriptionally active 2
      E-value: 0; Score: 698.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Pentatricopeptide repeat 0.00000048
    HMMPfam Pentatricopeptide repeat 0.00021
    HMMPfam Pentatricopeptide repeat 0.0015
    HMMPfam Pentatricopeptide repeat 0.000028
    HMMPfam Pentatricopeptide repeat 0.16
    HMMPfam Pentatricopeptide repeat 0.00029
    HMMPanther PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3.5e-95
    superfamily TPR-like 8.6e-22
    superfamily TPR-like 0.0000000000000015
    ProfileScan Smr protein/MutS2 C-terminal 15.278
    ProfileScan Pentatricopeptide repeat 12.156
    ProfileScan Pentatricopeptide repeat 8.966
    ProfileScan Pentatricopeptide repeat 9.953
    ProfileScan Pentatricopeptide repeat 9.317
    ProfileScan Pentatricopeptide repeat 9.46
    ProfileScan Pentatricopeptide repeat 10.961
    ProfileScan Pentatricopeptide repeat 9.054
    ProfileScan Pentatricopeptide repeat 9.569
    ProfileScan Pentatricopeptide repeat 8.331
    ProfileScan Pentatricopeptide repeat 10.271
    ProfileScan Pentatricopeptide repeat 9.306
    ProfileScan Pentatricopeptide repeat 7.706
    ProfileScan Pentatricopeptide repeat 7.026
    HMMTigr Pentatricopeptide repeat 0.000000028
    HMMTigr Pentatricopeptide repeat 0.0021
    HMMTigr Pentatricopeptide repeat 0.000056
    HMMTigr Pentatricopeptide repeat 0.0049
    HMMTigr Pentatricopeptide repeat 0.00011
    HMMTigr Pentatricopeptide repeat 0.00000024
    HMMTigr Pentatricopeptide repeat 0.0028
    HMMTigr Pentatricopeptide repeat 0.022
    HMMTigr Pentatricopeptide repeat 0.0037
    HMMTigr Pentatricopeptide repeat 0.000035
    HMMTigr Pentatricopeptide repeat 0.5
    HMMTigr Pentatricopeptide repeat 0.00038
    Gene3D Tetratricopeptide-like helical 0.00052
    HMMSmart Smr protein/MutS2 C-terminal 0.0014

    See the detailed result >

    AT1G74850.1

    Model type
    Protein coding
    Short Description
    plastid transcriptionally active 2
    Curator Summary
    Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression.
    Computational Description
    plastid transcriptionally active 2 (PTAC2); INVOLVED IN: positive regulation of transcription, DNA-dependent, transcription from plastid promoter; LOCATED IN: plastid chromosome, chloroplast, nucleoid; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Smr protein/MutS2 C-terminal (InterPro:IPR002625); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G02860.1); Has 58866 Blast hits to 15377 proteins in 307 species: Archae - 6; Bacteria - 74; Metazoa - 884; Fungi - 1027; Plants - 54432; Viruses - 0; Other Eukaryotes - 2443 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR