K25414

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased width (PATO:0000600) (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25414

Determination of introduced cDNA(s)

J033142O15 - Rice Full-length cDNAs - Original: J033142O15

full reading [+] show sequence

GAATCTCTCC CCGCTCCCCT CTCGAGCCGA ACCCCAAATC TCTCTCTCCT 
CTCTCTCTCT CTCTAGCAGC GGCGGCGGCG GCGGCGAGGC GAGGAAGATG 
CTGTGGGTGG ACAAGTACAG GCCGAAAACC CTAGACAAGG TCACCGTCCA 
TGACCAGGTC GCGCAAAACC TCAAGAAGCT GGTGGCGGAG CAGGATTGCC 
CGCACCTGCT CTTCTATGGG CCGTCGGGGT CCGGGAAGAA AACCCTAGTC 
ATGGCCCTCA TCAAGCAGAT GTTCGGCGCA GGCGCGGATA AGGTGAAGAT 
GGAGAACAAG ACATGGAAGA TCGATACTGG GTCGAGGAAT ATTGAGATAG 
AACTGGCAAT GTTGTCGAGC GCCCACCATG TGGAGATGAA CCCCAGCGAT 
GCTGGGTTTC AGGACAGGTA TGTTGTTCAG GAAGTCATTA AAGAGATGGC 
GAAGAATAGG CCAATTGATG CCAAGGGCAA GAGAGCATTT AAAGTCCTTG 
TCCTTAATGA AGTCGACAAG CTCTCACGAG AAGCCCAGCA TTCCCTTCGT 
AGGACAATGG AGAAGTACAG TGCATCATGC AGGCTGATAT TGTGCTGTAA 
TAGCTCATCA AAGGTGACAG AGGCTGTAAG GTCTCGTTGC TTGAACGTGC 
GAGTGAATGC ACCCAGTGAA GACCAGATCG TCCAAGTTCT GGAGTTCATT 
GGGAAGAAAG AAAATCTGCA GCTTCCATTT GGATTTGCTG CTAGGATAGC 
AGCACAATCG AACCGTAACC TGAGACGAGC GATACTGTTT TTTGAGACCT 
GCAAAGTCCA GCAATACCCA TTTACATCAA ATCAAGTAGC ACCTCCTCTT 
GACTGGGAGC AATATGTGTC AGAAATAGCA GCTGATATCA TGAAAGAACA 
AAGCCCTAAA AGGCTATTTG CTGTGCGCCA GAAGTTCTAC GAATTACTTG 
TGAATTGTAT CCCACCTGAA AGCATCTTAA AGAAGTTGTT GGCGGAGTTA 
CTGAAGAAAT TAGACTCTGA CTTGAAACAT GAAATTTGTC ACTGGGCTGC 
ACACTATGAA CACAAGATGC GTCTTGGGTC CAAGGCCATT TTTCACCTAG 
AAGCTTTCGT CGCCAAGTTC ATGAGCATCT ACAAGGAATT TCTTGTCTCT 
ACATTTGGCT GAGCATCTAC AAGGAAGCTG CTGCATGTCC ATTTCCGGCA 
ACACAAGGAT GTTGGGAAAC TCTCCATGCT AGCCATCTTG GCCAATGTAA 
TCGGTTCGAT CAACGCAACG GGATCAAGTT TGTAGCAGGT TTATGTGAGT 
GACATTGAGC TGGCCTTTTG TGTTTGT

Gene models with high sequence identity

AT5G27740.1 [+] show detail - ATPase family associated with various cellular activities (AAA)
E-value: 1e-158; Score: 556.00

InterPro Scan Digest

Program	Description	E-value
superfamily	P-loop containing nucleoside triphosphate hyd	1.6e-46
superfamily	DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal	3.1e-37
HMMPanther	REPLICATION FACTOR C / DNA POLYMERASE III GAM	4.6e-41
Gene3D	no description	2e-53
Gene3D	no description	1.9e-36
HMMSmart	ATPase, AAA+ type, core	0.00001
HMMPfam	DNA polymerase III, clamp-loader complex, subunit E, C-terminal	7.7e-39
HMMPfam	ATPase, AAA-type, core	0.000000028

See the detailed result >

AT5G27740.1

Model type: Protein coding
Short Description: ATPase family associated with various cellular activities (AAA)
Curator Summary: A locus involved in embryogenesis. Mutations in this locus result in embryo lethality.
Computational Description: EMBRYO DEFECTIVE 2775 (EMB2775); FUNCTIONS IN: nucleoside-triphosphatase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), DNA polymerase III, clamp-loader complex, subunit E, C-terminal (InterPro:IPR019483), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921); BEST Arabidopsis thaliana protein match is: ATPase family associated with various cellular activities (AAA) (TAIR:AT1G21690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR