K25504

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25504

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25504

Determination of introduced cDNA(s)

  • J033023N08 - Rice Full-length cDNAs - Original: J033023N08

    full reading [+] show sequence

    Nucleotide sequence: J033023N08 - full reading
    GGGCAACCAC CCAAGAAAAA GAAAAACAGA GGAGTCGAAG AAAAAGGATA 
    GCTTCAGTAA AGCCTAGCAA AGCGCCCATC AGAAACCCTA GCAGGAGCGC
    CGCCGCCGCC GCCGCCGCCC GCCGTCGTCA TCCTCCCTCT CGCCCTTTCA
    GGTCCCCAGC CCGCCGCGCC GCGGATCGAG TCGCCGTGTG AAGAAGGCCA
    GCGTCACCAT GGCGGACGAG GAGCAGGTGG AGAGGAAGGA GGAGGTCTCC
    GAGCTTACTC CTTTTGACCC AACCAAGAAA AAGAAGAAGA AGAAGGTTGT
    GATCCAAGAT CCATCTGATG AGGTGGATAA GTTGGCAGAG AAAACTGAGA
    GCTTGACAGT CGCTGAGACT GGTGAGCCAA GTTTTACAGG CATGAAAAAG
    AAGAAGAAGA AGCATGTGGA GCATGATACA TCTCTTACTG AAGCTGGAGA
    TGGTGAAGAT GCTATAGATG ATCAAATCGG AGAGGATGAA GAAGGAGAAG
    GGATTGTGCT TGGAGGTGCA ACTCGATACC CTTGGGAAGG AACTGACAGA
    GATTATAAAT ATGAAGAGCT GCTTGGCAGA GTATTTAATA TCCTGCGTGA
    GAATAATCCT GATCTTGCTG GTGATAGACG AAGAACTGTT ATGAGGCCTC
    CTCAAGTTCT TAGGGAAGGC ACAAAGAAGA CAGTTTTTGT GAACTTCATG
    GATTTGTGCA AAACAATGCA TAGGCAACCT GAACATGTGA TGATGTTTTT
    ACTTGCTGAG ATGGGAACAA GTGGATCCCT TGATGGGCAA CAAAGATTGG
    TTATAAAAGG AAGATTTGCT CCTAAAAACT TTGAAGCCAT ACTTAGGAGA
    TATATCAATG AGTATGTCAT ATGCAATGGG TGCAAGAGTC CTGATACCAT
    CCTTTCTAAG GAGAATAGGT TGTTCTTCCT TCGTTGCGAA CAGTGTGGTT
    CTTCAAGATC TGTTGCTCCT ATCAAGGCTG GATTCGTTGC CCAAGTTGGT
    CGTCGGAAGG CTGGAACCTA AGTTAAACGT CCACCCTGCT CAGAGCCTCG
    GATACACTCC CCAATCATCG CTACAAAAAC CTAATTTGCC GATTTACAAC
    AATTATTGTC CAGTTTTCAC TGTGTCTACA CCGTTTTGTG TATTTGTGAC
    CGTAACTCTG CTTCCAACTC TGCTGTGAAT TTCAGTTTTA TCCGAGACCA
    TGAGGATCAA TGTTTGCGGC C

    Gene models with high sequence identity

    1. AT5G20920.3 [+] show detail - eukaryotic translation initiation factor 2 beta subunit
      E-value: 2e-87; Score: 319.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Translation initiation factor IF2/IF5 3.6e-70
    superfamily Translation initiation factor IF2/IF5, N-terminal 1.6e-38
    superfamily Translation initiation factor IF2/IF5, zinc-binding 0.000000000012
    HMMPanther EUKARYOTIC TRANSLATION INITIATION FACTOR 2.5e-98
    HMMPfam Translation initiation factor IF2/IF5 1.4e-48

    See the detailed result >

    AT5G20920.3

    Model type
    Protein coding
    Short Description
    eukaryotic translation initiation factor 2 beta subunit
    Curator Summary
    protein synthesis initiation factor eIF2 beta
    Computational Description
    eukaryotic translation initiation factor 2 beta subunit (EIF2 BETA); FUNCTIONS IN: protein binding, translation initiation factor activity; INVOLVED IN: translational initiation, embryo development ending in seed dormancy; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor IF2/IF5, N-terminal (InterPro:IPR016189), Translation initiation factor IF2/IF5, zinc-binding (InterPro:IPR016190), Translation initiation factor IF2/IF5 (InterPro:IPR002735); BEST Arabidopsis thaliana protein match is: Translation initiation factor IF2/IF5 (TAIR:AT3G07920.1); Has 1323 Blast hits to 1320 proteins in 358 species: Archae - 271; Bacteria - 0; Metazoa - 350; Fungi - 277; Plants - 186; Viruses - 4; Other Eukaryotes - 235 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR