K25514

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased width (PATO:0000600) (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25514

Determination of introduced cDNA(s)

J013146A02 - Rice Full-length cDNAs - Original: J013146A02

full reading [+] show sequence

GAGCCCGTCT CTGGCCTCGT CACTTCACTC CACTGGCGGC GGCGGCGGCG 
GCGACAGGAC TCCCGCCGCC GCTCAGCTCC GGCGTCGCCC TCCCGGAGGT 
CCTCGTCGTC TGGGACATCC TGGTACGGCT TCCCCCCAAA CCCCTCCTCC 
GCTGCCGCCT GGTGTGCCGC GCATGGCGCC GCCTCACCTC CACCCGCGAC 
TTCCTCCTCG CCCACCACCG CCACCAGCCC TCCCTCCCCC TCGTCACCGG 
CTGCAGAAAC GGCGACGTCC TCGCCGTCGA CCGCCGGCGC CGGCTCCTCC 
ACCCTGTCGC CCGGTTCGAC AGCTCCGTCT TCTGCGTGGA GGAGGCCTCC 
TGCGACGGCA TCCTTGTCCT CTGGAGGAAG AGGGCCATCG GTGCCCATTC 
CAGTGTCCGC TTCTCGATCT GTAACCCGAC CACGCGTCAG TCCGGTGACA 
TCCCGCTGCC GCTGCTCACC GGGTTCATGC TCATGGGCTT GTACTGGCAC 
CGCCCCACCG GCGAGTATCG GCTTCTGCTC TACAGGATAG AGCTACCTGC 
TTCGGAGCGG CTCGTTGATG TTCTGATCCC CGGCGATAGA AACGCCTGCT 
ACGTCTACAC ATTGGGCTCT GGCGATTTGC CGAGGTGCAT TGGGTGGCCA 
GAGGCGGAGG CAAACGGCGC ATCTGTGCTG CTGCATGGGA GCCTGCATTG 
GTATAAGAGA ATCGAAGATA TGATTTTGGC GTTTGACATT ACAGCCGAGT 
CGTTCCGGTG GATGCGGTCT CCATTCGGCA AGGCGGTGTG GAGAGCGTTT 
CATGGCCTGT TTGAGATTAA TTGTATGCTC GGCATGTACT GCTGTGACGA 
TGGTGCGACA TTTGTAGATA TCTGGGTGCT GGAGGATTAT GAGAGAGAGG 
TCTGGTCTCT CAAGTACCGG GTTGAATTGC CAGTTCTAGA GATCAGGAGA 
GAGCTTGATG TGAAGCGTGA TCTTTACAGT GTGATGGTTT CTTCCGAGGA 
TGGGGATGTG CTTGTGCTGG TTAACTGCAA ACGAGCCATG CTCTACATTG 
GTACTGATGG CAAGCTGTTG GCGAGTTTGC CACATGATAA TGACGGCCTC 
AGTATTACTC CAGTGAAGCT TAGAGCAAGC CTTGTTCCGC ATGCATTCTT 
TCCATCTCTG CTGGACTATG TCGTGAATGC TTCGCCTTTC GTGTGATGCC 
TGCTGAATGA GTGTAAGACC CATCTGTTAT CTGATGAAGT CAGTTGGGTG 
GAACTCTTGT CTTCAGCGCT ACATGATGCC ATGAAAAGCT TGGCGATTAC 
CACATTCTGG AGTTGGCTGA CCTGATACTA GTCTTGCTGG ATGTAGCTGC 
TTGGTGTTTT ATCTTTGCTG GAGTTGTACA TTGTGTCTAT TAGGTATGTG 
CTATCACTTT GACTAGGTGA AGCCAGGGGA AGGTTTATAG TCCTAGTTTA 
CTGTCTTTAG GATGTTCTGT TAAAACTTGT TGAGTTATGT CTGTTAGATG 
ACTGGGGTCT GACCAGAAAA CCTGATATTA TCCTGTATGT TGGAAATACC 
TGCAGTTCCT TGCTTTGCTT TCAATGAAAA GCAAGGTCCT ATGACCTTTA 
TCT

Gene models with high sequence identity

AT3G52320.1 [+] show detail - F-box and associated interaction domains-containing protein
E-value: 0.000003; Score: 50.40

InterPro Scan Digest

Program	Description	E-value
HMMPfam	F-box associated domain, type 3	0.0000054
HMMPfam	F-box domain, cyclin-like	0.000025
superfamily	F-box domain, Skp2-like	0.00000000061
HMMTigr	F-box associated interaction domain	0.0000088

See the detailed result >

AT3G52320.1

Model type: Protein coding
Short Description: F-box and associated interaction domains-containing protein
Computational Description: F-box and associated interaction domains-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box associated ubiquitination effector family protein (TAIR:AT3G52330.1); Has 2113 Blast hits to 2071 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2111; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link: InterPro Scan - TAIR