K25521

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25521

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25521

Determination of introduced cDNA(s)

  • J023131N19 - Rice Full-length cDNAs - Original: J023131N19

    full reading [+] show sequence

    Nucleotide sequence: J023131N19 - full reading 
    GCCTCTCTCT CGCACCCTCT TATTGGCGGA GGAGGAGGAG GGATGGTGCG 
    GGAGGTTGCG GAGAGCTGTG TCGACGGGGT GGTGATGGAG ATGGTGGCGG 
    CCTACTGCGG CCGCTTCTAC GCCGCCAAGC CGGAGCTCGC CGCCCGCCGC 
    ATCGAGGCCA TCGGCTTCCA GGTCGGCCAC CAGCTCACGG AGAGATATAC 
    CATGGAGCGC CCTCGATTTA GTGATCATCT TGAAGCAATC AAATTTATCT 
    GCAAAGACTT TTGGTCAGAG CTATTCAAGA AGCAGATTGA CAATCTTAAA 
    ACTAATCATA GGGGAACATT TGTTCTTCAA GATAACCGTT TCCGGTGGCT 
    TACTCGTGTT TCTATAGATC CATCTGTAGA GAGCATGGAT GCAACTGACA 
    ATGACTCTGC AACACTAGGG GATAGCGCAG CCCAAACAAC AAGCATGCTT 
    CTGTACTTTC CATGCGGGAT AATAAGAGGT GCCTTGACCA ATTTGGGTAT 
    TTCGTGTTCT GTCACTGCAG ACATGTCCAA CCTTCCAGCA TGTTCTTTTG 
    TTGTGCGCAT AAAAACATGA GCTGCAGATT TTATGCCTGC TTGTTCGATC 
    AAGCGGTTTG AACATTAAAG AGTGCAAGCA CGCAATAGCC TGGGAAATAC 
    GCCTTGTAGC TGCTCCTTTT TCTTTCTCTT TGTTCTTAGA GGCACCTCTT 
    TACTTACTGA CTTCATCATA CCTTCCTTTG TGCACATCTT AAGATTGGGT 
    GTAATTTTGT GATTCGTGTG AACAAGAGAA GACAAAATGT AATATTTCTC 
    CTGAGATACT GGCTAGAGCC ATGTAATTTT GTTGTCTAGC AGTGGAGAAT 
    GTTTTATCTT GTATGTGATG CCCGCGCACA GTCACGATTT ACCTGTTTTT 
    ATGGTTTCAT TTTTATGGTT TCATCGATTT ACCCTGTTTA GGGGTGTTTG 
    GTTTGTAACT TGGACGTTGT GGAAACAATA GATCATAGCT GATAGTTTTG 
    TTGTTTGT

    Gene models with high sequence identity

    1. AT3G05000.1 [+] show detail - Transport protein particle (TRAPP) component
      E-value: 1e-74; Score: 276.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 3e-71
    HMMPfam Transport protein particle (TRAPP) component 1.1e-38

    See the detailed result >

    AT3G05000.1

    Model type
    Protein coding
    Short Description
    Transport protein particle (TRAPP) component
    Computational Description
    Transport protein particle (TRAPP) component; CONTAINS InterPro DOMAIN/s: Transport protein particle (TRAPP) component (InterPro:IPR007194); Has 457 Blast hits to 457 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 198; Fungi - 137; Plants - 66; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR