K25601

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25601

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25601

Determination of introduced cDNA(s)

  • J023080N04 - Rice Full-length cDNAs - Original: J023080N04

    full reading [+] show sequence

    Nucleotide sequence: J023080N04 - full reading 
    CATTGGGGCC GGACCAGCAA GCTCGGAGAA GGAAGCGGGC GAGCGGGGGC 
    CGTTCCTTGG CCACCCGCCC GGGCTCCGGG AACAGCCCCA CGTATACATA 
    TCGAGCCTTC TCCACCGATA GGTACCTGCA CGGATTCGGA TCGAATTGGC 
    GGATGATTTG ATTTGATAGG GCAAATCGGT GATCTCTGAG TAGTGGGGGA 
    TTGGGATTGG GAAGGGAACC AGTTCCAGAT GCCGATCTTG AAGGAATCGG 
    AGCGGCGGTA GGAGGAGGGG CCGAAGGTGT CGATGCGCCA CTGGGCCAGC 
    CGGGAGATGG TCTCCACCCG GTTCTCCCTC TCCATCCCGC CGCCGCCGCC 
    GCCGCCGCGC CGTCTCCTCT CACTCTACTT GTAATAACTC CCGAAGCGGA 
    AGGCAGGTGG TGGAAGAGCT GATGCGCCGG CGGCGGCAGC AAGCTGGTGA 
    GCAGGTTCCA GTCGACGATG CCGGCTTGCT GATCGACGTC GACGCAGCTG 
    CTAGCCTGCG AGACGTAGCC CTCGCCGTCG ACGATGGTGG GGCTCTCCAG 
    AGGCGGCATC ATGTCGGAGA AGTGAAGCTT GGACTCTGAA CTCAGAATGT 
    TGCTGTGGTC GACGACGCTG TTATTGTTGT TGTTGGCGAA GAGAGCTGAG 
    GCAGCGGCGC TCATCAATGG CCGCCCGGCG AAGCTAGGGT TGTCGTGGTG 
    CAGCAGCAAG CTGTAGTTGT CGGGGACGGC GGCGTAGGCT CCGGCGCCGT 
    AGCTGCCGGG GATGCAGCCG TAGGACAGCC TGTGCTGCTG CTGGTTGGGC 
    ATCGGCTTCT GAAACGCGCG GCAAACCACC CAACCTTCCT CCTGCATCCA 
    TATTCCATAT TAATATCCAT GAATTAACAT ATATAGTAGG ACAGATAATT 
    AAGTAAAGAA GTAAAAAATT AAGATGG

    Gene models with high sequence identity

    1. AT1G21780.2 [+] show detail - BTB/POZ domain-containing protein
      E-value: 6e-20; Score: 50.80

     

    InterPro Scan Digest

    See the detailed result >

    AT1G21780.2

    Model type
    Protein coding
    Short Description
    BTB/POZ domain-containing protein
    Curator Summary
    BTB/POZ domain-containing protein. Contains similarity to gb:AJ000644 SPOP (speckle-type POZ protein) from Homo sapiens and contains a PF:00651 BTB/POZ domain. ESTs gb:T75841, gb:R89974, gb:R30221, gb:N96386, gb:T76457, gb:AI100013 and gb:T76456 come from this gene;supported by full-length. Interacts with CUL3A and CUL3B.
    Computational Description
    BTB/POZ domain-containing protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT1G55760.1); Has 5195 Blast hits to 5164 proteins in 157 species: Archae - 0; Bacteria - 0; Metazoa - 3886; Fungi - 25; Plants - 983; Viruses - 68; Other Eukaryotes - 233 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR