K25602

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25602

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25602

Determination of introduced cDNA(s)

J033150M03 - Rice Full-length cDNAs - Original: J033150M03

full reading [+] show sequence

GGGGCTCATC TCTCTCTCTC TCACTCTTCT CCCTCTTCTC ACCACCAGAC 
GCCATCAAAC CCCTACCTCC CGCGGCGGCG GCGGCGGCGG CGGCCGGCGG 
CGAGCTCCGG ACAGACAGAG GAGGGCGCGA GCGGAGAGGG CGAGGAGGGA 
AGGAGGGAGG GAGGCGACAG GCATGGGGAC CCTCGGGCGC GCGATCTACA 
CGGTGGGGAA GTGGATCCGC GGCACGGGGC AGGCCATGGA CCGCCTCGGA 
TCCACCATCC AGGGCGGCCT CCGCGTCGAG GAGCAGCTTT CAAGGCATCG 
CACGATCATG AACATATTTG AGAAAGAGCC CAGAGTCCAC AAGGATGTTT 
TTGTTGCTCC CAGTGCAGCT GTGATTGGCG ATGTTGAGAT CGGACATGGA 
TCCTCAATCT GGTACGGCTC CATTTTAAGA GGTGATGTCA ACAGCATTCA 
TATTGGATCT GGATCAAATA TACAAGACAA TTCCCTTGTA CATGTTGCAA 
AAGCTAACAT CAGCGGGAAG GTTCTCCCAA CCATAATTGG AAACAATGTT 
ACAATAGGTC ATAGTGCTGT TCTGCACGCA TGCACCGTCG AGGATGAAGC 
TTTTGTTGGT ATGGGTGCCA CTCTGCTTGA TGGAGTGGTC GTTGAAAAGC 
ACAGCATGGT TGGTGCAGGA TCGCTTGTTA AGCAGAACAC AAGGATTCCT 
TCTGGAGAGG TCTGGGTCGG TAATCCTGCC AAGTTCCTAA GAAAGCTTAC 
TGAAGAGGAG ATAGCGTTCA TTGCTCAGTC AGCAACGAAC TACATCAATC 
TGGCCCAAGT CCATGCTGCC GAGAATTCCA AGACCTTCGA CGAGATCGAG 
CTCGAGAAGA TGCTGAGGAA AAAGTATGCC CACAAAGACG AGGAGTATGA 
TTCGATGCTC GGCGTGGTCC GTGAGATCCC GCCGGAGCTC ATCCTCCCGG 
ACAACATCCT CCCAAACAAG GCTCAGAAGG CTGTTGCTCA CTGAATGTTT 
TGTCAAGCTC CCGCTTGGGA AAAGCTTGGT TTTTTTGTTA CGTGTTTTGA 
CCTGGAACAA CATTTGACAC ATGTCTTTTG ATCTCATTGT CTGTTTTTCA 
AGCCCAATAA GAATTTGGGT CGAGCATTGT TTTAGGATCG ACCATATACA 
GTACCTCTCT TTGCATTACA ATGAAGAGCA GTTAATTTGG GTCACTTTTT 
ACATCTTTAC TGAAGTAGAA ACGCGTCCTC TGTCTGTG

Gene models with high sequence identity

AT1G47260.1 [+] show detail - gamma carbonic anhydrase 2
E-value: 4e-123; Score: 438.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	no description	1.2e-60
superfamily	Trimeric LpxA-like	1.4e-47
HMMPanther	SUGAR-1-PHOSPHATE GUANYL TRANSFERASE	0.00000018

See the detailed result >

AT1G47260.1

Model type: Protein coding
Short Description: gamma carbonic anhydrase 2
Curator Summary: Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.
Computational Description: gamma carbonic anhydrase 2 (GAMMA CA2); FUNCTIONS IN: carbonate dehydratase activity; INVOLVED IN: response to salt stress, regulation of oxygen and reactive oxygen species metabolic process, anther dehiscence, photorespiration; LOCATED IN: in 6 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004); BEST Arabidopsis thaliana protein match is: gamma carbonic anhydrase 1 (TAIR:AT1G19580.1); Has 12062 Blast hits to 12006 proteins in 2273 species: Archae - 302; Bacteria - 8576; Metazoa - 53; Fungi - 108; Plants - 233; Viruses - 0; Other Eukaryotes - 2790 (source: NCBI BLink).
Link: InterPro Scan - TAIR