K25608

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25608

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Original: K25608

Determination of introduced cDNA(s)

  • J013002N06 - Rice Full-length cDNAs - Original: J013002N06

    full reading [+] show sequence

    Nucleotide sequence: J013002N06 - full reading
    GGTTGGAGAG AGAGAGAGAG AGAGAGAGAG AGCGAGCCGA GCCTGTGCGG 
    TGCGGCGACG CCTGCTCCTC TTCGCTCGCG CGCGGCATTC CGGTCGTGTT
    TCTGAGGATC CGGATTGCAC GGTGTTCGGG CTGTTTCGTC AACCATGGGG
    AAGTCTCCGG CGAAGTGGAT CAAGTCTGTG CTCCTCGGGA AGAAATCAGC
    CAAGTCCAAC TCTACCAAGG CCAAGGATTT GGCGAAGGCT GCAAATAACA
    AGCCTGTGCT TTCTGAGGAT CCCCCTGTGA TTTCTGAGCC AGCTCTTGTT
    AATTCTCACA ACGATGGAAA TGCTGAAAAT TGCAAGTTAC CAAACGGAGT
    TGCAGTTGAA GCCATGGGTC AAGGAGTGGA GAACCAAAAC ATTGTTGGCT
    CCAAGGCACC AACTAGTCCA GAGAAACTAA GCGAAGAGCT AGCTGCAGTG
    AAGGCACAAG CGGCCTTCCG AGGTTACCTG GCACGTAGGG CATTCCGTGC
    ATTAAAAGGT ATCATAAGAC TCCAGGCACT GATCCGAGGA CATCTTGTAA
    GGAGACAAGC TGCATCAACC CTTCGTGTGA CATGGTTGAT CGTGAAACTT
    CAAGCTTTAG TTCGTGGAAG AAATGTTAGA CTCTCCGGTG CTTCCATTCA
    ATTTGTTGTG AAGTCCGGCC AACATAAGTT TCTGAGTGAT AAACCATCGG
    ACGCTTGGAA AGAGAAGGTA TCTTCAAACG CATATGTTCG AAAGCTTCTA
    TCTTCATCAA TTGGGTTAGA AGCTCTTCAC TTGCAGTATG ACAAGAGGGA
    CCCCAATTCA TTGTACAACT GGTTGGAGAG ATGGACTATA AGCCAGATTT
    GGAAGTCCTC TTCCCAACCA AAAAAAGTTG CTGATGGCAA ACCACAAGTA
    AGGAAGGCCA GTTATGCAAT GGAAACTGAG TCAGCCAAAT TAAAGCGCAA
    TGTTCGGAAG AGTTCTGCTG TCACTGTTGA TAGCTTCCAA ACTAATATGA
    CAGTTGAACC TGAAAAAATT AAACGAAATT CAAGAAAATT CTCTAGTTCC
    GCTGCTGATT CAGTACCAGA TAGCCAGTTA TCTGAACTTG AGAAGGTTAA
    GAGGAACCTT CGGAAGGTAA CTAATTCCAT GGCTGAAGCA TCAAAGATAT
    CTAGCTCCAG GGCAGATGCC TCAAAGGTAT CTAGCTCCAT GGCTGATGCC
    TCAAAGGTGT CTAGCTCCAC GGCTGATGCC TCAAAGGTAT CTGATTCCGT
    GGCTCAAATC CCACCTAGTC TCGTGAACGG GATCTCTGAT CATCAAGACA
    ACCAATGTGA GGAAGCACAA CAGAATGCAT GCGTGTCATT TCCTCCTGAA
    ACTCAGGAGT TGCACAGTGG CATTCTGTTG GAGGACAATT CACATATGAA
    TCTGTTGGAA CCTGATTTAA TATCTAACCC GGAAACTCCT TTCACTTCGA
    TTTTAACCTG GGAAAAATTT AATGATTCTA CTGCTGATGC TCAAGAAGTT
    GAAGTTCTGC CACTGCAGAA CATTGATAAT GAAGATAATT TCCCAGAAAA
    TGGTGTCTTA GGAAAGAAAG AGAAGCCAAG GTCCAAGGAA GAACCTCTGT
    CTAATGGAAA CCTTAAAACT AGCAAGAGGA GGTCTTCGTT CTCCACCAAA
    TCAGATTACC CGGAAAATGG AGCCCAGAAT ACGCCAGTTC CACGAAGGAA
    GCCAAGCTAT ATGGCTGCAA CAGAATCTGC AAAGGCAAAG TTGCGAGGAC
    AGAATTCACC AAGACTGGAT TCTGATTCAC CAGCAGACAT GAATGGCTTC
    ACACGCCGCC AGTCTCTACC TTCTTCTACA AACAACAGAG CGATCAGAGC
    TGAATGGAGA CGGTGGTGAG GACAACCAAC TTCCATTTGA ACGGTGCAAC
    GTTGTGGTGG ATGAAGTGCC CTGCTGTCCG TGAGATTGTC GCCATTGTTT
    TGTTCAAGAT GTAAAAATAT GTTGGCCCTG TGTTGATCTA TTATCTGTTG
    CATATTTGAG TTGTTAATTT ATTATCCATT GTTTCTTGTG

    Gene models with high sequence identity

    1. AT1G74690.1 [+] show detail - IQ-domain 31
      E-value: 7e-58; Score: 222.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam IQ calmodulin-binding region 4.9e-05
    HMMPfam IQ calmodulin-binding region 0.0026
    Coil coiled-coil 0
    HMMSmart IQ calmodulin-binding region 0.00053
    HMMSmart IQ calmodulin-binding region 30
    ProfileScan IQ calmodulin-binding region 10.512
    ProfileScan IQ calmodulin-binding region 8.517

    See the detailed result >

    AT1G74690.1

    Model type
    Protein coding
    Short Description
    IQ-domain 31
    Computational Description
    IQ-domain 31 (IQD31); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 30 (TAIR:AT1G18840.2); Has 8498 Blast hits to 6418 proteins in 674 species: Archae - 21; Bacteria - 823; Metazoa - 3400; Fungi - 838; Plants - 1044; Viruses - 44; Other Eukaryotes - 2328 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR