K25608

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small) decreased length (PATO:0000574) (Seed::Shape::short)

Invisible phenotypes

UV signal::Others::positive

Original: K25608

Determination of introduced cDNA(s)

J013002N06 - Rice Full-length cDNAs - Original: J013002N06

full reading [+] show sequence

GGTTGGAGAG AGAGAGAGAG AGAGAGAGAG AGCGAGCCGA GCCTGTGCGG 
TGCGGCGACG CCTGCTCCTC TTCGCTCGCG CGCGGCATTC CGGTCGTGTT 
TCTGAGGATC CGGATTGCAC GGTGTTCGGG CTGTTTCGTC AACCATGGGG 
AAGTCTCCGG CGAAGTGGAT CAAGTCTGTG CTCCTCGGGA AGAAATCAGC 
CAAGTCCAAC TCTACCAAGG CCAAGGATTT GGCGAAGGCT GCAAATAACA 
AGCCTGTGCT TTCTGAGGAT CCCCCTGTGA TTTCTGAGCC AGCTCTTGTT 
AATTCTCACA ACGATGGAAA TGCTGAAAAT TGCAAGTTAC CAAACGGAGT 
TGCAGTTGAA GCCATGGGTC AAGGAGTGGA GAACCAAAAC ATTGTTGGCT 
CCAAGGCACC AACTAGTCCA GAGAAACTAA GCGAAGAGCT AGCTGCAGTG 
AAGGCACAAG CGGCCTTCCG AGGTTACCTG GCACGTAGGG CATTCCGTGC 
ATTAAAAGGT ATCATAAGAC TCCAGGCACT GATCCGAGGA CATCTTGTAA 
GGAGACAAGC TGCATCAACC CTTCGTGTGA CATGGTTGAT CGTGAAACTT 
CAAGCTTTAG TTCGTGGAAG AAATGTTAGA CTCTCCGGTG CTTCCATTCA 
ATTTGTTGTG AAGTCCGGCC AACATAAGTT TCTGAGTGAT AAACCATCGG 
ACGCTTGGAA AGAGAAGGTA TCTTCAAACG CATATGTTCG AAAGCTTCTA 
TCTTCATCAA TTGGGTTAGA AGCTCTTCAC TTGCAGTATG ACAAGAGGGA 
CCCCAATTCA TTGTACAACT GGTTGGAGAG ATGGACTATA AGCCAGATTT 
GGAAGTCCTC TTCCCAACCA AAAAAAGTTG CTGATGGCAA ACCACAAGTA 
AGGAAGGCCA GTTATGCAAT GGAAACTGAG TCAGCCAAAT TAAAGCGCAA 
TGTTCGGAAG AGTTCTGCTG TCACTGTTGA TAGCTTCCAA ACTAATATGA 
CAGTTGAACC TGAAAAAATT AAACGAAATT CAAGAAAATT CTCTAGTTCC 
GCTGCTGATT CAGTACCAGA TAGCCAGTTA TCTGAACTTG AGAAGGTTAA 
GAGGAACCTT CGGAAGGTAA CTAATTCCAT GGCTGAAGCA TCAAAGATAT 
CTAGCTCCAG GGCAGATGCC TCAAAGGTAT CTAGCTCCAT GGCTGATGCC 
TCAAAGGTGT CTAGCTCCAC GGCTGATGCC TCAAAGGTAT CTGATTCCGT 
GGCTCAAATC CCACCTAGTC TCGTGAACGG GATCTCTGAT CATCAAGACA 
ACCAATGTGA GGAAGCACAA CAGAATGCAT GCGTGTCATT TCCTCCTGAA 
ACTCAGGAGT TGCACAGTGG CATTCTGTTG GAGGACAATT CACATATGAA 
TCTGTTGGAA CCTGATTTAA TATCTAACCC GGAAACTCCT TTCACTTCGA 
TTTTAACCTG GGAAAAATTT AATGATTCTA CTGCTGATGC TCAAGAAGTT 
GAAGTTCTGC CACTGCAGAA CATTGATAAT GAAGATAATT TCCCAGAAAA 
TGGTGTCTTA GGAAAGAAAG AGAAGCCAAG GTCCAAGGAA GAACCTCTGT 
CTAATGGAAA CCTTAAAACT AGCAAGAGGA GGTCTTCGTT CTCCACCAAA 
TCAGATTACC CGGAAAATGG AGCCCAGAAT ACGCCAGTTC CACGAAGGAA 
GCCAAGCTAT ATGGCTGCAA CAGAATCTGC AAAGGCAAAG TTGCGAGGAC 
AGAATTCACC AAGACTGGAT TCTGATTCAC CAGCAGACAT GAATGGCTTC 
ACACGCCGCC AGTCTCTACC TTCTTCTACA AACAACAGAG CGATCAGAGC 
TGAATGGAGA CGGTGGTGAG GACAACCAAC TTCCATTTGA ACGGTGCAAC 
GTTGTGGTGG ATGAAGTGCC CTGCTGTCCG TGAGATTGTC GCCATTGTTT 
TGTTCAAGAT GTAAAAATAT GTTGGCCCTG TGTTGATCTA TTATCTGTTG 
CATATTTGAG TTGTTAATTT ATTATCCATT GTTTCTTGTG

Gene models with high sequence identity

AT1G74690.1 [+] show detail - IQ-domain 31
E-value: 7e-58; Score: 222.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	IQ calmodulin-binding region	0.000049
HMMPfam	IQ calmodulin-binding region	0.0026
Coil	coiled-coil	0
HMMSmart	IQ calmodulin-binding region	0.00053
HMMSmart	IQ calmodulin-binding region	30
ProfileScan	IQ calmodulin-binding region	10.512
ProfileScan	IQ calmodulin-binding region	8.517

See the detailed result >

AT1G74690.1

Model type: Protein coding
Short Description: IQ-domain 31
Computational Description: IQ-domain 31 (IQD31); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 30 (TAIR:AT1G18840.2); Has 8498 Blast hits to 6418 proteins in 674 species: Archae - 21; Bacteria - 823; Metazoa - 3400; Fungi - 838; Plants - 1044; Viruses - 44; Other Eukaryotes - 2328 (source: NCBI BLink).
Link: InterPro Scan - TAIR