K25611

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25611

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25611

Determination of introduced cDNA(s)

  • J013047C20 - Rice Full-length cDNAs - Original: J013047C20

    full reading [+] show sequence

    Nucleotide sequence: J013047C20 - full reading 
    GAAGCGAAGA CTCGATCCAG GGTCTCTCAG GCCTACAAGC CCACGATTAA 
    GCCCCCATCC CGTAATCCCC CACGCTCCAT CGATCGTCGC CGCAGCCGAT 
    TCCTTCCAAA TCTCTTCACC CGATTGAGGA TACATCTAAT CTGAGCTCTC 
    TAGTCTGCAG ATATGGCAAG CAAAAGGATT CAGAAGGAAC TCATGGATTT 
    GCGGAAGGAT CCACCAACAT CATGCAGTGC TGGGCCTGCA GGAGAGGATT 
    TATTCCATTG GCAGGCCACA ATCATGGGCC CTAGCGACAG CCCCTACGCT 
    GGTGGGGTGT TCTTTGTTAA CATCCATTTC CCCCCTGACT ACCCTTTTAA 
    GCCTCCAAAA GTGAACTTCC AAACAAAGGT GTATCACCCA AACATCAACT 
    CCAATGGAAG CATTTGCCTT GACATCCTCA AGGAGCAGTG GAGCCCAGCA 
    TTGACCATAT CAAAGGTCCT CCTATCCATC AGCTCTCTTC TCACTGACCC 
    CAACCCAGAT GATCCCCTTG TCCCAGAGAT CGCCCACGTC TACAAGAGCC 
    AGAGGCCACG TTATGAGGAG ACGGCGAGGG CCTGGACCCA GAAATACGCA 
    ATGGGTTAGC AGCTATCATT CTTGACAACG TTGCACCTTG CAAGAAATCG 
    AGTCTAGTTG GTTGACTGTC ATGTTAAGAT CCAAGATGGT TATGTCTCTC 
    TGAACTAATT GCCCGTTTCT GTACAGTACT GTCAAAATTG CATCATCTGT 
    AAATCCCATG TTGATTCACA CTTTGGTTTA TACCCTGAAG AGCGTGCGTG 
    ATCATGTCAT TTGTGATTAT TGTAACCTTG TCAAGAAGCC AGTCAGACTT 
    GTATGCATCA ACACATATTT TTCATAATTT TGTGGTGGTT TGGTCC

    Gene models with high sequence identity

    1. AT1G64230.2 [+] show detail - ubiquitin-conjugating enzyme 28
      E-value: 4e-66; Score: 248.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther UBIQUITIN-CONJUGATING ENZYME E2 5.2e-108
    HMMPanther UBIQUITIN-CONJUGATING ENZYME E2 5.2e-108
    HMMPfam Ubiquitin-conjugating enzyme, E2 1.9e-52
    HMMSmart Ubiquitin-conjugating enzyme, E2 4.1e-76
    superfamily Ubiquitin-conjugating enzyme/RWD-like 7.9e-67
    Gene3D Ubiquitin-conjugating enzyme/RWD-like 4.7e-60
    PatternScan Ubiquitin-conjugating enzyme, E2 0
    ProfileScan Ubiquitin-conjugating enzyme, E2 47.645

    See the detailed result >

    AT1G64230.2

    Model type
    Protein coding
    Short Description
    ubiquitin-conjugating enzyme 28
    Computational Description
    ubiquitin-conjugating enzyme 28 (UBC28); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin conjugating enzyme 8 (TAIR:AT5G41700.5); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR