K25620

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small) dark green (PATO:0001249) (Cauline leaf::Color::dark)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) increased width (PATO:0000600) (Rosette leaf::Shape::wide) dark green (PATO:0001249) (Rosette leaf::Color::dark)
	fruit (PO:0009001)	decreased length (PATO:0000574) (Silique::Shape::short)
	seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997) (Seed::Number::few)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25620

Determination of introduced cDNA(s)

J033119P16 - Rice Full-length cDNAs - Original: J033119P16

full reading [+] show sequence

GATTCCCTCC CCTCTCCACT CTCCGCCCTA GAGCTCGACG GCGGCGGCAA 
CAAGGGCTGG GGGATGAAGA TATCCGTGAA GACACTCAAG GGATCCACCT 
TCCAGATCGA GGTGGACTCC GCGCAGAAGG TTGCTGATGT GAAAAGGATA 
ATCGAGACTA CTCAAGGACA GCACATTTAC CCAGCTGAGC AACAGATGCT 
CATTCATCAG GGGAAGGTGC TCAAGGATGA CACCACATTG GATGAAAACA 
AAGTTCTTGA AAACAGCTTC CTTGTTATAA TGCTTAGACA GGGTAAGGGC 
TCATCAAGTT CAGCTCCTGC TACATCTAAG GCACCCTCAA ATCAGGCTCC 
CCCTACTCAA ACAGTGCCTG CAGCTCCTGC ATCTCAAGCA CCAGTTGCAC 
CAGCAACTAC TGTACCTGTC ACTGTCAGTG CTCCTACCCC AACTGCCACA 
GCTTCCCCAG CTCCTGCTGT TGCTGTATCC TCTGAAGCTG ATAACTACGG 
TCAGGCCACC TCAAACCTTG TTGCTGGCAG CAATCTAGAG GCAACAATTC 
AATCAATTCT TGAAATGGGT GGTGGAATAT GGGATAGAGA CATTGTGCTG 
CATGCTCTAA GCGCTGCATT CAACAACCCG GGGAGGGCTG TTGAATATCT 
GTACTCTGGT GTTCCTGAGC AGATGGACAT TCCAGTTCCA CCTCCGAGTA 
TACAGCCAGC CAATCCTACC CAGGCTTCAC AGGCAACTCA ACCAGCAGCT 
CCATCAATTC TTTCGTCTGG ACCAAACGCT AGTCCCTTGG ACCTCTTTCC 
TCAAGCCCTT CCAAATGCTT CCACCGATGC TGCTGGTCTA GGAAATCTTG 
ATGCTTTGCG CAATAATGCA CAATTCCGAA CCTTGCTTTC TTTAGTGCAA 
GCCAATCCTC AAATTTTACA GCCATTGCTT CAAGAATTGG GGAAACAAAA 
TCCCCAGATT TTGCAGCTGA TTCAGGAAAA CCAAGCTGAG TTCCTCCACT 
TAATCAATGA ACCAGCTGAG GGTGATGATG AAGAGAATTT GCTAGACCAG 
TTTCCAGAGG CAATGCCACA GACCATAGCA GTTACTCCAG AGGAGAATGA 
AGCCATACTT CGTCTTGAAG CAATGGGCTT TGACCGCGCG CTTGTTCTGG 
ACGTGTTCTT CGCTTGCAAC AAGGACGAGC AGCTGGCGGC AAACTATCTC 
CTAGATCACA TGAACGAGTT CGACGACGAG GGGCCACCAT AAGACACGCG 
GATGGAATAC TTGTCAAGCT CAAACCTGGT ATCATTGGAG CAAAGGGTTT 
GTGACCCGTA GTCCGTAGAG CAAAAGGCTT AGTAAAACCT TTTTATTTTA 
TTTTATTTTT TTGTGGATTC GTCTCCTTCT GTTCCTTCTT TTCTTTCATT 
AGTCTGTAAT TCTTTTCAGT TTGGCTTTTA CTTTCTTGCG TACATACTCT 
AGATTACCTT TTTTACAGAC TTGATAACGG AGGTATAAAA AGGTTCAGAG 
CCCGTCTGCA TTC

Gene models with high sequence identity

AT5G38470.1 [+] show detail - Rad23 UV excision repair protein family
E-value: 7e-83; Score: 305.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	UV EXCISION REPAIR PROTEIN RAD23	6.9e-154
HMMSmart	Ubiquitin	5e-19
HMMSmart	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	0.000018
HMMSmart	Heat shock chaperonin-binding	0.0000011
HMMSmart	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	0.000000039
FPrintScan	UV excision repair protein Rad23, C-terminal	2.9e-31
FPrintScan	UV excision repair protein Rad23, C-terminal	2.9e-31
FPrintScan	UV excision repair protein Rad23, C-terminal	2.9e-31
FPrintScan	UV excision repair protein Rad23, C-terminal	2.9e-31
ProfileScan	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	10.86
ProfileScan	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	13.39
ProfileScan	Ubiquitin supergroup	19.499
superfamily	Ubiquitin-like	1.2e-24
superfamily	XPC-binding domain	2.6e-19
superfamily	UBA-like	0.0000000000086
superfamily	UBA-like	0.000000016
Gene3D	no description	1e-21
Gene3D	no description	0.00000000000034
Gene3D	XPC-binding domain	3.9e-20
Gene3D	no description	0.0000000000000038
HMMPfam	XPC-binding domain	1.2e-21
HMMPfam	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	0.00000000031
HMMPfam	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	0.0000023
HMMPfam	Ubiquitin	9.8e-17
HMMTigr	UV excision repair protein Rad23	2.2e-123

See the detailed result >

AT5G38470.1

Model type: Protein coding
Short Description: Rad23 UV excision repair protein family
Curator Summary: Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome.
Computational Description: RADIATION SENSITIVE23D (RAD23D); FUNCTIONS IN: damaged DNA binding, ubiquitin binding, proteasome binding; INVOLVED IN: response to cold, nucleotide-excision repair; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), UV excision repair protein Rad23 (InterPro:IPR004806), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin (InterPro:IPR000626), XPC-binding domain (InterPro:IPR015360), Ubiquitin supergroup (InterPro:IPR019955), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Rad23 UV excision repair protein family (TAIR:AT3G02540.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR